New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1917264 =	29 (1.240)	5 (0.240)	5/232	NT	15.3%	coding (1003/1083 nt)	PP_1718	EAL domain‑containing diguanylate phosphodiesterase
	?	NC_002947	1917343 =	29 (1.360)					coding (924/1083 nt)	PP_1718	EAL domain‑containing diguanylate phosphodiesterase

GACCCTGAGCGAAAAGGCAGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGCCCGATCGTGGCATTCAAGTGCACTGTCGGTTGTT  >  NC_002947/1917195‑1917488                                                                                                                                                     |                                                                                                                                                  gACCCTGAGCGAAAAGGCAGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAgg                                                                                                                                                  >  2:65271/1‑150 (MQ=255)  aCCCTGAGCGAAAAGGCAGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGc                                                                                                                                                 <  2:250641/150‑1 (MQ=255)    ccTGAGCGAAAAGGCAGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCg                                                                                                                                               >  2:130342/1‑150 (MQ=255)     cTGAGCGAAAAGGCAGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCgg                                                                                                                                              >  2:210036/1‑150 (MQ=255)         gCGAAAAGGCAGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGcaca                                                                                                                                          <  1:130342/150‑1 (MQ=255)                   aGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCAt                                                                                                                                <  2:294799/150‑1 (MQ=255)                   aGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCAt                                                                                                                                >  1:330740/1‑150 (MQ=255)                    gggCCTGCTGGCCAATTTCCACCCGTCGTTCCCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATc                                                                                                                               <  2:68354/150‑1 (MQ=255)                         tgctgGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCtgt                                                                                                                          <  1:65271/150‑1 (MQ=255)                           ctgGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTCGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGCATAGGCCGGCACAGGCAGCGCATCCCTGTGa                                                                                                                        >  1:74242/1‑150 (MQ=255)                                cAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCaa                                                                                                                   >  2:518759/1‑150 (MQ=255)                                cAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCCGCACAGGCAGCGCATCCCTGTGAATCaa                                                                                                                   >  2:295839/1‑150 (MQ=255)                                        aCCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCAcc                                                                                                           >  1:99165/1‑150 (MQ=255)                                              cgtTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGAGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGc                                                                                                     <  1:397480/150‑1 (MQ=255)                                                             ccgccACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATccacca                                                                                      <  1:581087/150‑1 (MQ=255)                                                                    cGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAg                                                                                                                                     <  2:61605/96‑1 (MQ=255)                                                                    cGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAg                                                                                                                                     >  1:61605/1‑96 (MQ=255)                                                                    cGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGAATCCCCCACTTCCaa                                                                               <  2:330740/150‑1 (MQ=255)                                                                           GCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCCAGGCTGGTCAGCTACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTcc                                                                        <  2:323613‑M1/150‑1 (MQ=255)                                                                                    cccgctcctacgggggcctgtgcccaatcaccaatcaggcgtaggagcgggttcacccgcgaataGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTgg                                                               >  2:527275‑M2/66‑150 (MQ=255)                                                                                    cccGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTgg                                                               >  1:66790/1‑150 (MQ=255)                                                                                    cccGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTgg                                                               >  2:231228/1‑150 (MQ=255)                                                                                     ccgctcctacgggggcctgtgcccaatcaccaatcaggcgtaggagcgggtttacccgcgaataGGCCGGCACAGGCAGCGCATCCCTGTGAAt                                                                                                                      >  1:593964‑M2/65‑94 (MQ=255)                                                                                     ccgctcctacgggggcctgtgcccaatcaccaatcaggcgtaggagcgggtttacccgcgaataGGCCGGCACAGGCAGCGCATCCCTGTGAAt                                                                                                                      <  2:593964‑M2/30‑1 (MQ=255)                                                                                       gctcctacgggggcctgtgcccaatcaccaatcaggcgtaggagcgggtttacccgcgaataGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTAt                                                            >  1:217377‑M2/63‑150 (MQ=255)                                                                                          ccTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCgg                                                         <  1:231228/150‑1 (MQ=255)                                                                                               gCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCaa                                                                               >  2:353586/1‑123 (MQ=255)                                                                                               gCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCaa                                                                               <  1:353586/123‑1 (MQ=255)                                                                                                             tggGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCt                                      <  2:66790/150‑1 (MQ=255)                                                                                                               ggCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGc                                    <  1:210036/150‑1 (MQ=255)                                                                                                                 cacaGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGccc                                  >  1:521189/1‑150 (MQ=255)                                                                                                                  acaGGCCCCCGTAGGAGCGGACTCACGCGCGGATAGGCCGGCACGGGCAGCGCATCCCTATGACTCAACCCGCACCCCCTGCCATCGACATCCACCACTTCCAAAGCCCCCAGGCGCTGCTATCGGCCAAACAGCTCCAGCAGCTgaaac                                 >  2:221492/1‑146 (MQ=255)                                                                                                                      gCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACa                                                  >  1:440077/1‑129 (MQ=255)                                                                                                                      gCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACa                                                  <  2:440077/129‑1 (MQ=255)                                                                                                                      gCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGAGCTGGTATCGGCCAAACAGCTCCAGCAGCTGCCCGATCg                             >  1:339363/1‑150 (MQ=255)                                                                                                                         ggcgtaggagcgggtttacccgcgaataGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGCCCGATCGTgg                          <  2:217377‑M2/122‑1 (MQ=255)                                                                                                                                gAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCg                                                          <  2:208879/111‑1 (MQ=255)                                                                                                                                gAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCg                                                          >  1:208879/1‑111 (MQ=255)                                                                                                                                     ggTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGCGCGATCGTGGCATTCAAGTGCa              >  1:114716/1‑150 (MQ=255)                                                                                                                                       ttCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCg                                                                                                >  2:110096/1‑66 (MQ=255)                                                                                                                                       ttCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCg                                                                                                <  1:110096/66‑1 (MQ=255)                                                                                                                                              gcgaataGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGCCCGATCGTGGCATTCAAGTGCACTGTCGgtt     <  1:518759‑M2/143‑1 (MQ=255)                                                                                                                                              gcgaataGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGCCCGATCGTGGCATTCAAGTGCACTGTCGgtt     <  2:99165‑M2/143‑1 (MQ=255)                                                                                                                                                 aataGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGCCCGATCGTGGCATTCAAGTGCACTGTCGgttgtt  >  1:76994‑M2/5‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GACCCTGAGCGAAAAGGCAGGGCCTGCTGGCCAATTTCCACCCGTCGTTCTCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACGCCTGATTGGTGATTGGGCACAGGCCCCCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGCACAGGCAGCGCATCCCTGTGAATCAACCCGCACCCCCTGCCATCGGCATCCACCACTTCCAATGCCTCCAGGTGCTGGTATCGGCCAAACAGCTCCAGCAGCTGCCCGATCGTGGCATTCAAGTGCACTGTCGGTTGTT  >  NC_002947/1917195‑1917488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.