| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2078299 | 24 (1.030) | 3 (0.150) | 3/220 | NT | 13.4% | intergenic (+41/+74) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 2078346 | 18 (0.890) | intergenic (+88/+27) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein | |||||
GCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCAC > NC_002947/2078222‑2078483 | gCTGGCGGTGCGGTGCGATGCCGGGGAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCATCGAGATATTCCAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCgg < 2:149499/150‑1 (MQ=255) gTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGACGGTCCGCCCGCACCCACAGGGGTATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGacaacaa > 1:381947/1‑149 (MQ=255) ttCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgg > 2:556682‑M2/1‑112 (MQ=255) ttCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgg < 1:556682‑M2/120‑9 (MQ=255) cTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGGCCGCCCGCACCCGCAGCGATCCCACACCCCTGAAGCCACGGGGGTCCATGTGGGAGCAGCCGGGCCCGCAGAGATGCCGGTTCCGACACCATCGACaccgaa > 2:440779/1‑145 (MQ=255) cTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGAGATCACAGCCCTGAAGACAGTGGGGTCCCTGTGGGACGAGGCGGCCCCGCGAAGAGGCCCGGTCAGACAACATCGACagtcaa > 1:500930/1‑145 (MQ=255) cTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCGCCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCtg > 2:578434/1‑150 (MQ=255) agagAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAAGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGCGCGGGCGGGCCCGCGAAAAGGCCGGCTCAGACAACATCCACAATGAACGATACCTGTgcg > 1:76705/1‑150 (MQ=38) tatgGCCTGTGCCGGCCTGTTCGCGGGGCCCCCCGCACCCCTAGGGATATCACAGCCCTGAAGACAGTGGGGTCTTGGGGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGt < 2:69489/150‑1 (MQ=255) ccGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCa < 2:381947/150‑1 (MQ=255) ggCCCGCCCGCCCCCACAGGCATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGcc < 1:48804/150‑1 (MQ=255) ggCCCGCCCGCACCCACAGGGATATCGCAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGcc < 1:599837/150‑1 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGCGGCCGGTTCATACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcag > 2:246465/1‑150 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcag > 2:566431/1‑150 (MQ=255) gcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcagca < 1:578434/150‑1 (MQ=255) ccccacACCAGCAGGGATCTCACAGACCTGAGCACGGTGGCGTCCTTGTCGGAGCGCGCGGGCGCGCGAAGAGGCCGGTTCATACAACACCGACAATGAACGATACCTGTGCGCCAAGATGTTCGTCGTCATACACCCGCTTGCCcagca < 1:172498/149‑1 (MQ=255) cACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctacagggcgccgagggcaacgaaccgccccgccagcccctgctcggcaaactgctccacc < 2:172231‑M2/150‑103 (MQ=255) ccACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTtgctgc < 1:566431/150‑1 (MQ=255) tatCACCCCCCTTCAGACAGTGGGGGCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCGGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAgcggc < 1:254124/150‑1 (MQ=255) tCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggaaataattctctaaagggcctgca > 2:94274‑M2/1‑34 (MQ=255) tCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggaaataattctctaaagggcctgca < 1:94274‑M2/89‑56 (MQ=255) cccTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTgg < 2:500930/150‑1 (MQ=255) ggTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCAc > 1:104598/1‑150 (MQ=255) | GCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCAC > NC_002947/2078222‑2078483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |