New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2664051 =	19 (0.820)	5 (0.260)	4/206	NT	24.8%	intergenic (+33/‑130)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	2664132 =	15 (0.790)					intergenic (+114/‑49)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase

GTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC  >  NC_002947/2663998‑2664279                                                                                                                                       |                                                                                                                                                    gTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAAc                                                                                                                                      >  2:567960/1‑150 (MQ=255)   gCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCt                                                                                                                                    >  2:68774/1‑150 (MQ=255)        tCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGa                                                                                                                               >  2:138957/1‑150 (MQ=255)           agcagcGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATc                                                                                                                            <  1:68774/150‑1 (MQ=255)                               gagagGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTcc                                                                                                        <  2:254211/150‑1 (MQ=255)                                agagGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTCACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCa                                                                                                       <  1:138957/150‑1 (MQ=255)                                    gCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCatgat                                                                                                   >  1:191286/1‑150 (MQ=255)                                       aCCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGaa                                                                                                <  2:365141/150‑1 (MQ=255)                                                  ttGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCAGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAcc                                                                                     <  1:502135/150‑1 (MQ=255)                                                                    ccgcgaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccTCAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTg                                                                                           >  1:324295‑M2/68‑126 (MQ=255)                                                                    ccgcgaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccTCAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTg                                                                                           <  2:324295‑M2/59‑1 (MQ=255)                                                                    ccgcgaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTTAAACCTTCCGAATCCTGTGACCGAGCCTGATTCAATGATGAACACTGCATACCGCAAGCACCTGCCAGGCa                                                                   >  1:40801‑M2/68‑150 (MQ=255)                                                                    CCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCa                                                                   <  1:297412‑M1/150‑1 (MQ=255)                                                                    CCGCGAATGCACCCGGCCTTGTAACAACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGGACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCa                                                                   <  1:199158‑M1/150‑1 (MQ=255)                                                                     CGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCAc                                                                  <  1:281022‑M1/150‑1 (MQ=255)                                                                      gcgaatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCAcc                                                                 >  1:349315‑M2/66‑150 (MQ=255)                                                                         aatgcgtcagcaggtgcacagtggttacaaggccgggtgcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATGCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGAc                                                              <  2:349315‑M2/88‑1 (MQ=255)                                                                         AATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGAc                                                              <  1:413952‑M1/150‑1 (MQ=255)                                                                              aCCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGa                                                         <  2:117579/150‑1 (MQ=255)                                                                              aCCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGa                                                         >  1:117579/1‑150 (MQ=255)                                                                              aCCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGa                                                         <  1:567960/150‑1 (MQ=255)                                                                                    ccTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACtt                                                   <  2:413952/150‑1 (MQ=255)                                                                                      ttGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCg                                                 >  1:292083/1‑150 (MQ=255)                                                                                             cACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCca                                                                                                                                                     >  2:210380/1‑43 (MQ=255)                                                                                             cACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCca                                                                                                                                                     <  1:210380/43‑1 (MQ=255)                                                                                                tgtgCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCcgcgc                                       >  2:200113/1‑150 (MQ=255)                                                                                                           tgACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAgg                            <  2:199158/150‑1 (MQ=255)                                                                                                             aCGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCGAGCACCTGCCAGGCACCGAcc                                                             >  2:106171/1‑115 (MQ=255)                                                                                                             aCGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCGAGCACCTGCCAGGCACCGAcc                                                             <  1:106171/115‑1 (MQ=255)                                                                                                              cGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGa                         <  2:297412/150‑1 (MQ=255)                                                                                                              cGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGa                         <  1:200113/150‑1 (MQ=255)                                                                                                               gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCAcc                                                                            >  1:523731‑M2/25‑98 (MQ=255)                                                                                                               gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCAcc                                                                            <  2:523731‑M2/74‑1 (MQ=255)                                                                                                               gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGAt                        >  1:408214‑M2/25‑150 (MQ=255)                                                                                                                       gggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTACATGATAAACACGTCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCg                <  2:356253‑M2/134‑1 (MQ=255)                                                                                                                                     ccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGCGGCGATCAAGCCCGGCGCCTACGACGGc  >  1:58290‑M2/3‑150 (MQ=255)                                                                                                                                       acaGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCaa                     >  1:349211/1‑129 (MQ=255)                                                                                                                                       acaGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCaa                     <  2:349211/129‑1 (MQ=255)                                                                                                                                       |                                                                                                                                                    GTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC  >  NC_002947/2663998‑2664279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.