New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3846594	28 (1.200)	4 (0.180)	4/248	NT	11.5%	coding (147/966 nt)	PP_3395	LysR family transcriptional regulator
	?	NC_002947	= 3846629	34 (1.490)					coding (112/966 nt)	PP_3395	LysR family transcriptional regulator

GCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATTGGCTTCTAAAACCGGGTTTGAATTACCGGCCCCC  >  NC_002947/3846494‑3846775                                                                                                                                        |                                                                                                                                                   gCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAga                                                                                                                                      <  1:405009/150‑1 (MQ=255)   cccGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAACGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAgacg                                                                                                                                    >  1:534203/1‑150 (MQ=255)     cgccgGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAgacgac                                                                                                                                  <  2:534203/150‑1 (MQ=255)        cgGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCACTGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGAt                                                                                                                               <  2:365798/150‑1 (MQ=255)               ggCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAgg                                                                                                                        >  2:583501/1‑150 (MQ=255)                gCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGAcgacga                                                                                                                                >  2:250323/1‑141 (MQ=255)                gCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGAcgacga                                                                                                                                <  1:250323/141‑1 (MQ=255)                    cACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAg                                                                                                                   <  1:574116/150‑1 (MQ=255)                     aCGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAgg                                                                                                                  >  1:360838/1‑150 (MQ=255)                         cgcgCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGaaa                                                                                                              <  2:81809/150‑1 (MQ=255)                           cgcTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAgg                                                                                                            <  1:550013/150‑1 (MQ=255)                                gCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTc                                                                                                       <  2:360838/150‑1 (MQ=255)                                 cTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCg                                                                                                      >  2:481392/1‑150 (MQ=255)                                  tACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCCTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGa                                                                                                     <  1:583501/150‑1 (MQ=255)                                                gCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCt                                                                                       <  1:304963/150‑1 (MQ=255)                                                         aaGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGc                                                                              >  1:478751/1‑150 (MQ=255)                                                            cgcgcCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTg                                                                           <  2:478751/150‑1 (MQ=255)                                                              cgcCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTggg                                                                         <  2:324462/150‑1 (MQ=255)                                                                 cTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGaa                                                                      >  1:137427/1‑150 (MQ=255)                                                                   cAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAgg                                                                    >  2:265313/1‑150 (MQ=255)                                                                             aaTACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTa                                                          <  2:137427/150‑1 (MQ=255)                                                                              aTACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTgg                                                                          <  2:304285/133‑1 (MQ=255)                                                                              aTACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTgg                                                                          >  1:304285/1‑133 (MQ=255)                                                                               tACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTTGCTCGGCTTGGGGAAGGGACCGCCGTAGc                                                        >  2:338297/1‑150 (MQ=255)                                                                                  gTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACt                                                     >  2:420566/1‑150 (MQ=255)                                                                                     tACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTTGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTa                                                  <  1:338297/150‑1 (MQ=255)                                                                                                 acggcgCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTgccgtccgccgtcagtaaacgtatttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgc                                      <  1:39663‑M2/150‑111 (MQ=255)                                                                                                 acggcgCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCa                                      >  1:511834/1‑150 (MQ=255)                                                                                                   ggcgCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGCAGGGACCGCCGTAGCACTGTAGCAAAAACCGCAtt                                    <  1:415369/150‑1 (MQ=255)                                                                                                      gcCATGAACGCGCGCTCGCCCGCGCGGGCGATGGTgccgtccgccgtcagtaaacgtatttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtgga                                                                <  2:317946‑M2/119‑85 (MQ=255)                                                                                                      gcCATGAACGCGCGCTCGCCCGCGCGGGCGATGGTgccgtccgccgtcagtaaacgtatttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtgga                                                                >  1:317946‑M2/1‑35 (MQ=255)                                                                                                         aTGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATTGGc                                 >  2:320543/1‑147 (MQ=255)                                                                                                         aTGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATTGGc                                 <  1:320543/147‑1 (MQ=255)                                                                                                           gAACGCGCGCTCGCCTGCGCGGGCGATGGTgccgtccgccgtcagtaaacgtatttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgctgcgccatgc                            >  2:39663‑M2/1‑30 (MQ=255)                                                                                                               gcgcgcTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATTGGCTTCTAAAAc                        >  1:152167/1‑150 (MQ=255)                                                                                                                     tCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAgg                                                                                                   >  1:361946/1‑69 (MQ=255)                                                                                                                     tCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAgg                                                                                                   <  2:361946/69‑1 (MQ=255)                                                                                                                      cGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATTGGCTTCTAAAACCGGGttt                 <  2:511834/150‑1 (MQ=255)                                                                                                                                     tGGTGCCTTCTTCGCAGACGACGATGAACAGATTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATTGGCTTCTAAAACCGGGTTTGAATTACCGGccccc  >  2:377522/1‑150 (MQ=255)                                                                                                                                        |                                                                                                                                                   GCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATTGGCTTCTAAAACCGGGTTTGAATTACCGGCCCCC  >  NC_002947/3846494‑3846775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.