New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4067814 =	26 (1.120)	3 (0.130)	3/244	NT	10.0%	coding (1294/3108 nt)	mdtC	multidrug transporter membrane protein
	?	NC_002947	4067854 =	29 (1.300)					coding (1254/3108 nt)	mdtC	multidrug transporter membrane protein

CCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAAC  >  NC_002947/4067706‑4067989                                                                                                                                                     |                                                                                                                                        tcgctcaacaccctgtcgctgatggcgctgctccttgccaccgggctggtggtggacgatgccatcgtggtgctggaaaacatctccaggcatatcgagaacggccagCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGtggct                                                                                                                                        >  2:198517‑M1/109‑150 (MQ=255)          tGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTtct                                                                                                                               <  2:474713/150‑1 (MQ=255)                       gAACAGGTTCCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGAGACACGTTCATCGACAGCAAGGTGAAACCAACCTCCGTCGGGCCCAGGTAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGga                                                                                                                  <  2:54808/150‑1 (MQ=255)                                gcgcACGATGCCGCCCATGAACAGGATTGATACGAACACCTCCACCAGCGCCACGTTCATCGACAAGCGTTTTAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTc                                                                                                         <  1:11040/150‑1 (MQ=255)                                     cGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGca                                                                                                    <  2:73740/150‑1 (MQ=255)                                      gATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGga                                                                                                                  <  2:477113/135‑1 (MQ=255)                                      gATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGga                                                                                                                  >  1:477113/1‑135 (MQ=255)                                                 gtggtggacgatgccatcgtggtgctggaaaacatctccaggcatatcgagaacggccagCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGc                                                                                                                       >  1:178286‑M1/61‑119 (MQ=255)                                                 gtggtggacgatgccatcgtggtgctggaaaacatctccaggcatatcgagaacggccagCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGc                                                                                                                       <  2:178286‑M1/59‑1 (MQ=255)                                                        gATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTccac                                                                                 >  2:373204/1‑150 (MQ=255)                                                           ggAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTccaccac                                                                              <  1:589753/150‑1 (MQ=255)                                                           ggAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTccaccac                                                                              <  2:17846/150‑1 (MQ=255)                                                                 gAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGt                                                                                     >  2:477642/1‑137 (MQ=255)                                                                 gAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGt                                                                                     <  1:477642/137‑1 (MQ=255)                                                                  aaCACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCg                                                                       <  1:373204/150‑1 (MQ=255)                                                                    cacCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATg                                                                                            >  1:141552/1‑127 (MQ=255)                                                                    cacCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATg                                                                                            <  2:141552/127‑1 (MQ=255)                                                                                   cacGTTCATCGACAGCAAGGTGAACCCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAgcgc                                                      <  2:412607/150‑1 (MQ=255)                                                                                      gTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCaa                                                                >  2:578720/1‑137 (MQ=255)                                                                                      gTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCaa                                                                <  1:578720/137‑1 (MQ=255)                                                                                          gcatatcgagaacggccagccaccgatgaaggcggccttcctgggcgccaaggaggtggCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTccaccac                                                                              >  1:178286‑M2/60‑119 (MQ=255)                                                                                          gcatatcgagaacggccagccaccgatgaaggcggccttcctgggcgccaaggaggtggCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTccaccac                                                                              <  2:178286‑M2/60‑1 (MQ=255)                                                                                          aTCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTACTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGc                                               <  1:46656/150‑1 (MQ=255)                                                                                                 gCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGgt                                        >  1:349885/1‑150 (MQ=255)                                                                                                     ggTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGgttgtt                                    <  2:349885/150‑1 (MQ=255)                                                                                                           agccaccgatgaaggcggccttcctgggcgccaaggaggtggCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGAGCAGCGCCATCAGCGACAGGGTGTTGAGCga                              >  2:198517‑M2/43‑150 (MQ=255)                                                                                                           aCCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCga                              <  2:113514/150‑1 (MQ=255)                                                                                                                    ctTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTcca                                                                                  >  2:469009/1‑89 (MQ=255)                                                                                                                    ctTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTcca                                                                                  <  1:469009/89‑1 (MQ=255)                                                                                                                                 aaGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACt        <  2:145213/150‑1 (MQ=255)                                                                                                                                      cgccTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGt                                                                     <  1:596920/84‑1 (MQ=255)                                                                                                                                      cgccTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGt                                                                     >  2:596920/1‑84 (MQ=255)                                                                                                                                       gccTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAAc  <  2:326090/150‑1 (MQ=255)                                                                                                                                          ttCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGgttgtt                                    <  1:80651/113‑1 (MQ=255)                                                                                                                                          ttCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGgttgtt                                    >  2:80651/1‑113 (MQ=255)                                                                                                                                                     |                                                                                                                                        CCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAAC  >  NC_002947/4067706‑4067989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.