Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 152,157 | A→T | 19.0% | intergenic (‑51/+43) | PP_0143 ← / ← PP_0144 | membrane protein/insulinase family metalloprotease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 152,157 | 0 | A | T | 19.0% | 44.1 / 5.6 | 21 | intergenic (‑51/+43) | PP_0143/PP_0144 | membrane protein/insulinase family metalloprotease |
Reads supporting (aligned to +/- strand): ref base A (11/6); new base T (2/2); total (13/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.18e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 |
CGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCAC > NC_002947/152019‑152283 | cGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCTTGCCCGCGaa < 2:437879/149‑1 (MQ=255) cGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCTTGCCCGCGaa > 1:437879/1‑149 (MQ=255) gccgAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTgg > 2:399704/1‑150 (MQ=255) atgatgCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATa < 1:399704/150‑1 (MQ=255) tAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTAc < 1:550140/150‑1 (MQ=255) gcTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCTTGCCCGCGaa > 1:562176/1‑110 (MQ=255) gcTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCTTGCCCGCGaa < 2:562176/110‑1 (MQ=255) gcTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTg > 1:51336/1‑123 (MQ=255) gcTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTg < 2:51336/123‑1 (MQ=255) ttGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGc > 2:113601/1‑150 (MQ=255) ttCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGc > 2:338586/1‑150 (MQ=255) gatgatGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATAccgc < 1:462935/125‑1 (MQ=255) gatgatGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATAccgc > 2:462935/1‑125 (MQ=255) ggggATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGaaa < 1:373483/77‑1 (MQ=255) ggggATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGaaa > 2:373483/1‑77 (MQ=255) gCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAgc > 2:264398/1‑150 (MQ=255) cATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAgcg > 1:137408/1‑150 (MQ=255) tACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGcccc > 1:325863/1‑150 (MQ=255) gACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCccgcc > 1:71913/1‑150 (MQ=255) gAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCa < 1:113601/150‑1 (MQ=255) gCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCAc > 2:236917/1‑150 (MQ=255) | CGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCAC > NC_002947/152019‑152283 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |