| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,939,163 | A→C | 27.3% | intergenic (‑65/‑114) | PP_1738 ← / → PP_1739 | hypothetical protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,939,163 | 0 | A | C | 27.3% | 25.2 / 12.8 | 22 | intergenic (‑65/‑114) | PP_1738/PP_1739 | hypothetical protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (7/9); new base C (4/2); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 | |||||||||||
CTGAAGCGGCCACAGCCATGAGCAAGCTGCCGAGCAGGGCAGCGAGGCGCAAAGATCGAAGCATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATCATGGATGCTTTCGATTACCGCTATTGGAGAACAGGATGTCTCGTTCGCTGC > NC_002947/1939035‑1939304 | cTGAAGCGGCCACAGCCATGAGCAAGCTGCCGAGCAGGGCAGCGAGGCGCAAAGATCGAAGCATGTAATCCCCCAAAAGAACACAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCAtt < 1:257191/150‑1 (MQ=255) caGCCATGAGCAAGCTGCCGAGCAGGGCAGCGAGGCGCAAAGATCGAAGCATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGGATTTGGCGTACTTGc < 2:432065/150‑1 (MQ=255) caGCCATGAGCAAGCTGCCGAGCAGGGCAGCGAGGCGCAAAGATCGAAGCATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGc < 2:432077/150‑1 (MQ=255) aTGAGCAAGCTGCCGAGCAGGGCAGCGAGGCGCAAAGATCGAAGCATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCt > 1:203840/1‑150 (MQ=255) aTGAGAAAGCTGCCGAGCAGGGCAGCGAGGCGCAAAGATCGAAGCATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCt < 2:460049/150‑1 (MQ=255) gtggggcAAGGATCGAAGCATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGAttt > 2:153903/6‑150 (MQ=255) gcgtAAAGATCGAAGCATGTAATCCCCCAAAAGAACGCCAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGc < 1:116506/150‑1 (MQ=255) gCATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTACGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAACCGGGCa < 2:169061/150‑1 (MQ=255) cATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACgg > 1:593410/1‑146 (MQ=255) cATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACgg < 2:593410/146‑1 (MQ=255) aTGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAACTTTGCCCGc < 1:588462/76‑1 (MQ=255) aTGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAACTTTGCCCGc > 2:588462/1‑76 (MQ=255) cccccAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATc < 1:153903/150‑1 (MQ=255) cccAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTAGGCGTAATTGCTATCTGCAACATAGCAGCCGGGGCGCGCTATTGCCTTCTCACGGGGCATAAGCGATccg > 1:106965/1‑148 (MQ=255) aaaGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATCATGGAt < 2:203840/150‑1 (MQ=255) aaCGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATCATGGATGCtt > 1:237601/1‑150 (MQ=255) gCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGTCGGGCAAAGTTGCCCGATGACGTGGCATTTGGCGTCCTGTTTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATCATGGATGCTTTCg > 1:229677/1‑150 (MQ=255) acaACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATCATGGATGCTTTCGATTACCGCTATTGGAGAACAGGATGTCTCg > 2:247379/1‑150 (MQ=255) ccgcagCGGGCAACTTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTACAACATAGCGGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATCATGGATGCTTTCGATTACCGCTATTGGAGAACAGGATGTCTGGTTc > 2:390410/6‑150 (MQ=255) cgcagCGGGCAACTTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACggg > 1:69255/5‑92 (MQ=255) cgcagCGGGCAACTTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACggg < 2:69255/88‑1 (MQ=255) gCGGGCAACTTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATCATGGATGCTTTCGATTACCGCTATTGGAGAACAGGATGTCTCGTTCGCTGc > 2:242871/1‑150 (MQ=255) | CTGAAGCGGCCACAGCCATGAGCAAGCTGCCGAGCAGGGCAGCGAGGCGCAAAGATCGAAGCATGTAATCCCCCAAAAGAACGCAAGGTCGAGCAGTGTGCAGGCTAGGACCACAACCAGGCGGGCAAAGTTGCCCGCTGCGGTGGCATTTGGCGTACTTGCTATCTGCAACATAGCTGCCGGGGTGTGATTTTGCCTTAGAAACGGGCATAAGCGATCATGGATGCTTTCGATTACCGCTATTGGAGAACAGGATGTCTCGTTCGCTGC > NC_002947/1939035‑1939304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |