| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,960,142 | T→A | 29.2% | intergenic (+50/‑78) | bolA → / → PP_1758 | DNA‑binding transcriptional dual regulator/rhodanese‑like domain‑containing sulfurtransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,960,142 | 0 | T | A | 29.2% | 34.0 / 15.4 | 24 | intergenic (+50/‑78) | bolA/PP_1758 | DNA‑binding transcriptional dual regulator/rhodanese‑like domain‑containing sulfurtransferase |
| Reads supporting (aligned to +/- strand): ref base T (7/10); new base A (3/4); total (10/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
CTGGCCATCCACACCTACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGTACAAGTTCGTCACCCTGGAAGACTACGTCGAGCTGCGCGA > NC_002947/1960006‑1960290 | cTGGCCATCCACACCTACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTAAGCGGcccccttt < 1:307141/150‑5 (MQ=255) tGGCCATCCACACCTACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGc < 1:431159/142‑1 (MQ=255) tGGCCATCCACACCTACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGc > 2:431159/1‑142 (MQ=255) cccTACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCaaa < 1:137786/149‑1 (MQ=255) cTACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTAAGCGGccc < 2:462641/131‑1 (MQ=255) cTACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTAAGCGGccc > 1:462641/1‑131 (MQ=255) tACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGt > 2:122006/1‑150 (MQ=255) aaGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGt < 2:226547/150‑1 (MQ=255) ggTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGa < 1:122006/150‑1 (MQ=255) tCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAgg < 1:193218/150‑1 (MQ=255) cGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTc < 1:366895/150‑1 (MQ=255) ccGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAGCGATTGCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGt > 1:6065/1‑150 (MQ=255) tgCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGc < 2:449001/72‑1 (MQ=255) tgCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGc > 1:449001/1‑72 (MQ=255) cGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGtt < 2:559804/122‑1 (MQ=255) cGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGtt > 1:559804/1‑122 (MQ=255) ttttGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGt > 2:304288/1‑150 (MQ=255) gCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCAtc < 1:487891/115‑1 (MQ=255) gCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCAtc > 2:487891/1‑115 (MQ=255) cATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGTACAAGTTCGTCACCCTGGaa < 1:304288/150‑1 (MQ=255) ggggCCGCTAAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGTACAAGTTCGTCACCCTGGaa < 2:335843/138‑1 (MQ=255) ggggCCGCTAAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGTACAAGTTCGTCACCCTGGaa < 2:335913/138‑1 (MQ=255) ggggCCGCTAAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGTACAAGTTCGTCACCCTGGaa > 1:335913/1‑138 (MQ=255) ggggCCGCTAAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGTACAAGTTCGTCACCCTGGaa > 1:335843/1‑138 (MQ=255) ttAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGTACAAGTTCGTCACCCTGGAAGACTACGTCGAGCTGCGCGa > 1:464490/1‑150 (MQ=255) | CTGGCCATCCACACCTACACCGCCGAAGAGTGGGCCAAGGTCGGCGTTGCACCGGCCTCGCCCGTGTGTGCGGGCGGCGGGCACTGAAACCGTTCTTTTGTTCTGGTAGAATCCGCATCACCCAAAGGGGGCCGCTTAGCGGCCCCTTGCTTTTTATGCAAACGTCAAACCCGGTCCGCCCCTTACGAGGGCAACCACCTGGAGATTCCGTTACATGTCTCAAGCCATCGTCGTCGCGGCGCTGTACAAGTTCGTCACCCTGGAAGACTACGTCGAGCTGCGCGA > NC_002947/1960006‑1960290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |