| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,709,494 | C→A | 20.1% | C10* (TGC→TGA) | PP_2372 → | sugar‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,709,494 | 0 | C | A | 20.1% | 49.5 / 4.6 | 24 | C10* (TGC→TGA) | PP_2372 | sugar‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (13/6); new base A (3/2); total (16/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAAAGAACCAAATGGACTATGTGAGATTGACTGCCATTTGTGCGCTGAGCATCGCCAGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAGGCCGCCGCGGACGAGCTGGGCATGACCCTGCAGGT > NC_002947/2709366‑2709634 | aaaaGAACCAAATGGACTATGTGAGATTGACTGCCATTTGTGCGCTGAGCATCGCCAGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCa > 1:271901/1‑150 (MQ=255) cAAATGGACTATGTGAGATTGACTGCCATTTGTGCGCTGAGCATCGCCAGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCa > 1:200910/1‑150 (MQ=255) aaTGGACTATGTGAGATTGACTGCCATTTGTGCGCTGAGCATCGCCAGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATCCGCAAc > 1:73443/1‑150 (MQ=255) actgccTGCCACTTGTGCGCTGAGCATCGCCCGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGgtgt > 2:213060/6‑150 (MQ=255) ccATTTGTGCGCTGAGCATCGCCAGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTtc < 1:165953/145‑1 (MQ=255) ccATTTGTGCGCTGAGCATCGCCAGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTtc > 2:165953/1‑145 (MQ=255) tGAGCATCGCCAGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGGTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTcc > 1:446219/1‑150 (MQ=255) gTTTATAATCAGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTgg > 2:581184/1‑150 (MQ=255) ataATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCggtg > 1:166455/1‑107 (MQ=255) ataATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCggtg < 2:166455/107‑1 (MQ=255) tCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCggtg < 1:226093/103‑1 (MQ=255) tCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCggtg > 2:226093/1‑103 (MQ=255) agatATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGACTTCTGGTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAgg > 1:475749/1‑150 (MQ=255) aCCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAGGCCGCCGCgg > 2:494847/1‑150 (MQ=255) ccccATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACAAGCTATACCCGCTTCATGCAGGCCGcggcggg > 2:296816/1‑149 (MQ=255) cTCAAGGCCCTGTGCCAAAGCTTGTGACTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGc < 2:73843/114‑1 (MQ=255) cTCAAGGCCCTGTGCCAAAGCTTGTGACTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGc < 2:73907/114‑1 (MQ=255) cTCAAGGCCCTGTGCCAAAGCTTGTGACTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGc > 1:73907/1‑114 (MQ=255) cTCAAGGCCCTGTGCCAAAGCTTGTGACTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGc > 1:73843/1‑114 (MQ=255) aaGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAGGCCGCCGCGGACGAGCTgg < 2:3988/148‑1 (MQ=255) aaGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAGGCCGCCGCGGACGAGCTgg < 2:4027/148‑1 (MQ=255) aaGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAGGCCGCCGCGGACGAGCTgg > 1:4027/1‑148 (MQ=255) aaGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAGGCCGCCGCGGACGAGCTgg > 1:3988/1‑148 (MQ=255) aaGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAGGCCGCCGCGGACGAGCTGGGCATGACCCTGCAGGt < 1:213060/150‑1 (MQ=255) | AAAAGAACCAAATGGACTATGTGAGATTGACTGCCATTTGTGCGCTGAGCATCGCCAGGCGTTTATAATCCGGTGTTTGCTTCGCAGAGATGTTACCCCATGCTCAAGGCCCTGTGCCAAAGCTTGTGCCTTGTCTTGCCACTGGTGGCAAATGCGCAACCGGCTTCGGTGGTGTTTCTCAACCCGGGGCTGTCCACCGAGACATTCTGGACCAGCTATACCCGCTTCATGCAGGCCGCCGCGGACGAGCTGGGCATGACCCTGCAGGT > NC_002947/2709366‑2709634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |