| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,223,256 | A→G | 21.9% | intergenic (‑520/+40) | PP_2823 ← / ← PP_2824 | methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,223,256 | 0 | A | G | 21.9% | 32.1 / 7.4 | 23 | intergenic (‑520/+40) | PP_2823/PP_2824 | methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (8/10); new base G (2/3); total (10/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.13e-01 | |||||||||||
TGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGC > NC_002947/3223113‑3223392 | tGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGGCGCCtt > 2:332425/1‑150 (MQ=255) aaGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGGCGCCTTccc < 1:332425/150‑2 (MQ=255) gCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGaa < 2:506206/150‑1 (MQ=255) aaTGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGGCGCCTTccctggaa < 1:120916/148‑7 (MQ=255) aaTGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGGCGCCTTccctggaa > 2:120916/1‑142 (MQ=255) cgcCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGGCGCCTTCCCTGGAAGgcgtca < 1:109644/150‑4 (MQ=255) cAGAGCCTGCAAAAAGCAGGGCAGGGGCTATTGGCGGCTGGTGCTCGGGTTGGATCGGCAATGCGCGGGGAGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGt > 1:94724/1‑150 (MQ=255) tGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGGAAGGCGGGGGGCGGCGGTTGCGCGACGACGGAAAGCGGCGAAGACACGCGCGGTTTGGATGGGGTGAGGCCTTCTAGGTAAGGCGCGGGGTCTACCgg > 2:32669/1‑150 (MQ=255) cagggcaggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACt < 1:97380/150‑1 (MQ=255) ggcaggCGCTATCGGGGCCTGGTGTTTGGGTGGGATCGGGAAGGCGCGGGGGGGGAGTTGCGCGACGACCGAAGGCGGCGAAGAGACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTGCCGGGGGGCGGCTTac < 2:94724/150‑2 (MQ=255) gcgcTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCGGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACtt < 1:559083/150‑1 (MQ=255) tGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTg < 1:305858/150‑1 (MQ=255) tGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAAt < 1:334083/150‑1 (MQ=255) tGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAAt < 2:381401/150‑1 (MQ=255) tGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGa < 2:420570/150‑1 (MQ=255) gATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACa > 1:108795/1‑150 (MQ=255) tCGGCAAGGCGCGGGGAGGCAGTTGCGCGACGACGGAAGCCGGCGAAGGCACCAGCCGCAGTCTGGGGATGACGCCTTCCAGGGAAGGCGCCGGGTCTACGGGGAGGCGACTTAGGACTTGGAGGTTTTGGGTGGAGAAATCATGACAAt > 2:21457/1‑150 (MQ=255) gCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGaa < 2:108795/150‑1 (MQ=255) gAGCGGTTTGGTGGGTGTGACGCCTTGAAGGGGAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGTCGGTTTTGGGTGGAGAAATCATGACAATGAAAGCGTAAATCAAGGCTTTCCCACGCTCTGCGCTAAAGGGTTCGGACTCg > 2:211279/1‑150 (MQ=255) gAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGATAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCg > 1:482005/1‑150 (MQ=255) aGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCAt > 2:129970/1‑91 (MQ=255) aGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCAt < 1:129970/91‑1 (MQ=255) gTTTGGTGGGGGTGACGCGTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAgg > 2:358148/1‑150 (MQ=255) aCGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGgc > 1:332971/1‑137 (MQ=255) aCGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGgc < 2:332971/137‑1 (MQ=255) | TGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGC > NC_002947/3223113‑3223392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |