| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,655,511 | C→G | 17.4% | A309P (GCC→CCC) | PP_3220 ← | ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,655,511 | 0 | C | G | 17.4% | 54.5 / 6.7 | 23 | A309P (GCC→CCC) | PP_3220 | ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base C (10/9); new base G (2/2); total (12/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.48e-01 | |||||||||||
GGGGCGGAACTGGCTCCAGGTGTAACCGGTGACGTCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCGCAGCAGTGGCGTCTGGCCCCGCGGTGCGGCTGGCCTGCGCCGTGGCACGAAGGCCGGCG > NC_002947/3655362‑3655657 | ggggCGGAACTGGCTCCAGGTGTAACCGGTGACGTCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGc < 1:276610/150‑1 (MQ=255) ggAACTGGCTCCAGGTGTAACCGGTGACGTCCTCGCCGGCGAACACTACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCa < 2:19342/150‑1 (MQ=255) ggTGTAACCGGTGACGTCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAg > 2:408074/1‑150 (MQ=255) tCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAgtg > 2:111700/1‑150 (MQ=255) gAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGtt < 2:43350/150‑1 (MQ=255) aaCACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGttt < 1:222165/150‑1 (MQ=255) accaccTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTg < 1:510237/150‑1 (MQ=255) ccaccTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGc < 1:124641/150‑1 (MQ=255) cTGCCCTTGACTGGGCTTCTCGTGGTTTTTTTTGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCggg < 1:156343/150‑1 (MQ=255) gCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCa > 2:581142/1‑150 (MQ=255) cTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAAc < 1:111700/150‑1 (MQ=255) gCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGGATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGtt > 1:18685/1‑150 (MQ=255) gCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGGATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGtt > 1:18729/1‑150 (MQ=255) gCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGtt > 2:112064/1‑150 (MQ=255) cAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGAc > 1:279059/1‑150 (MQ=255) gcAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCgcagca < 1:112064/150‑1 (MQ=255) tctTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCGCAGCAGTGGCGTCTGGc > 2:141994/1‑150 (MQ=255) cGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAggg > 2:504731/1‑68 (MQ=255) cGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAggg < 1:504731/68‑1 (MQ=255) tCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCGCAGCAGTGGCGTCTGGCCCCGCGGTGCGGCTGGCCTGCGCCGTg > 1:574721/1‑150 (MQ=255) cGCCAGGGTCTGCCCGGGATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCGCAGCAGTGGCGTCTGGCCCCGCGGTGCGGCTGGCCTGCGCCGTgg < 2:18729/150‑1 (MQ=255) cGCCAGGGTCTGCCCGGGATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCGCAGCAGTGGCGTCTGGCCCCGCGGTGCGGCTGGCCTGCGCCGTgg < 2:18685/150‑1 (MQ=255) ccGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCGCAGCAGTGGCGTCTGGCCCCGCGGTGCGGCTGGCCTGCGCCGTGGCACGAAGGCCGgc > 1:260028/1‑150 (MQ=255) cGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCGCAGCAGTGGCGTCTGGCCCCGCGGTGCGGCTGGCCTGCGCCGTGGCACGAAGGCCGgcg > 2:598952/1‑150 (MQ=255) | GGGGCGGAACTGGCTCCAGGTGTAACCGGTGACGTCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCATGCAGTTCAAGGCTCAGGTCGTGCAGGGCAGTGTAATGCTCGTTTTTGCCGGGCAGCTCGAACCGTTTGCCGACATGGCTCAGGCGCAGCAGTGGCGTCTGGCCCCGCGGTGCGGCTGGCCTGCGCCGTGGCACGAAGGCCGGCG > NC_002947/3655362‑3655657 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |