Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,816,546 | A→T | 16.0% | G106G (GGT→GGA) | cpxR ← | two‑component system regulator CpxR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,816,546 | 0 | A | T | 16.0% | 61.2 / 5.2 | 25 | G106G (GGT→GGA) | cpxR | two‑component system regulator CpxR |
Reads supporting (aligned to +/- strand): ref base A (10/11); new base T (2/2); total (12/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGGA > NC_002947/3816402‑3816689 | tGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCggg > 1:220976/1‑150 (MQ=255) gcCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCTCCCGgtga > 1:246199/1‑150 (MQ=255) cAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTg > 2:202327/1‑150 (MQ=255) cgcgcCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCTCCCGGTGAGCTggtg < 1:137035/150‑3 (MQ=255) cgcgcCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCTCCCGGTGAGCTggtg < 2:246199/150‑3 (MQ=255) gcgcCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGGTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCt > 1:501866/1‑150 (MQ=255) gcCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTg < 1:154423/150‑1 (MQ=255) ccGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCAt > 1:598191/1‑150 (MQ=255) ccACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGc < 2:493228/150‑1 (MQ=255) acaTTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGccc < 2:598191/150‑1 (MQ=255) ccACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTCTTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCg < 1:41046/150‑1 (MQ=255) cTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTc < 2:13352/150‑1 (MQ=255) gTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTcagc > 1:166164/1‑150 (MQ=255) tttCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGt < 1:179251/140‑1 (MQ=255) tttCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGt > 2:179251/1‑140 (MQ=255) ttcccAGCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTcagccgca > 2:98611/3‑150 (MQ=255) ccATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCCTCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAgcagcagca > 1:207128/1‑150 (MQ=255) aTGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCt < 1:202327/150‑1 (MQ=255) gcgACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTgc < 2:220976/150‑1 (MQ=255) gACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTgcac > 1:403765/1‑150 (MQ=255) gCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGgcgc < 2:328020/150‑1 (MQ=255) gCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTGCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTc < 2:207128/150‑1 (MQ=255) accaGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTc > 1:75304/1‑143 (MQ=255) accaGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTc < 2:75304/143‑1 (MQ=255) caGCTCTCCCGGTGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGga > 2:144869/1‑150 (MQ=255) | TGCGCCCCAGCGCGCCTCGCGCCGCCCCGGCCACATTTTCAATGCGCCACTGCGTACCTGTTCAGGTACCTCGGGCGCGCTGGTTTCACCCATCAGGTATGGCTGCACGCGACGCAGTATTGCCCGCAGGCGTGCCACCAGCTCACCGGGAGAGCTGGGCTTGGGCACATAGTCATCGGCCCCCAGCTCCAGGCCGGCAATGCGGTCGATGTTGTCACCGCGTGCTGTCAGCAGCAGCACCGGCACCTGACTACGTGCACGCACGCGGCGCAGCACCTCGATACCGGA > NC_002947/3816402‑3816689 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |