| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,908,672 | G→A | 13.8% | A193T (GCC→ACC) | PP_3450 → | TPR repeat‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,908,672 | 0 | G | A | 13.8% | 60.2 / 3.7 | 29 | A193T (GCC→ACC) | PP_3450 | TPR repeat‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (12/13); new base A (2/2); total (14/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.94e-01 | |||||||||||
TCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGACCGGCGACCT > NC_002947/3908524‑3908820 | tCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGc > 2:477976/1‑150 (MQ=255) aCTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCg > 1:121194/1‑150 (MQ=255) cagcaACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGCCACATCAAGACCCGGACCTGGCCCGGGaa < 1:286231/150‑1 (MQ=255) caACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCCGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGCCCTGGCCCGGGAACAg > 1:451681/1‑150 (MQ=255) cccGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTc > 2:369274/1‑150 (MQ=255) cGAGCAGCCCCAGCAACTTAGGCACCTGGGCCGCGAAGGCCACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTAACATCAAGACCCGGACCTGGCACGGGAACAGTTCag < 2:462510/150‑2 (MQ=255) agcGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCt < 1:369274/150‑1 (MQ=255) cAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGcccc > 1:217002/1‑150 (MQ=255) aaGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTAAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATg < 1:96365/150‑1 (MQ=255) aGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGAGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGc < 1:342744/150‑1 (MQ=255) ccacgaTGCAGCGCTGGTCCGGCGCCTCAGCAACGACCGGCAGCGCCCCTGCCTTGAACCGGTCCTCTGGCTGTCACATCAAGCCCCGGACCTGGCCCGGGAACCGGTCAAGCCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGt < 2:79278/148‑1 (MQ=255) tGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGcc < 1:477976/150‑1 (MQ=255) ccTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAg > 1:383132/1‑82 (MQ=255) ccTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAg < 2:383132/82‑1 (MQ=255) cTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGACCCGGGAACAGTTCAAGGCCTGCCCCGCCaa > 1:3694/1‑78 (MQ=255) cTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGACCCGGGAACAGTTCAAGGCCTGCCCCGCCaa > 1:3565/1‑78 (MQ=255) cTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGACCCGGGAACAGTTCAAGGCCTGCCCCGCCaa < 2:3565/78‑1 (MQ=255) cTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGACCCGGGAACAGTTCAAGGCCTGCCCCGCCaa < 2:3694/78‑1 (MQ=255) cGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATg < 2:121194/150‑1 (MQ=255) tGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGaa < 1:481358/150‑1 (MQ=255) tGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGaa < 2:404996/150‑1 (MQ=255) tGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCCGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGaa > 1:189673/1‑150 (MQ=255) aTCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATc > 1:580326/1‑150 (MQ=255) aTCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATc > 1:446084/1‑150 (MQ=255) aaGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGc > 1:159965/1‑150 (MQ=255) aGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGc < 1:505978/149‑1 (MQ=255) aGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGc > 2:505978/1‑149 (MQ=255) ccGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCa > 1:610976/1‑98 (MQ=255) ccGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCa < 2:610976/98‑1 (MQ=255) ggCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGACCGGCGACCt > 2:523281/1‑150 (MQ=255) | TCAACTGCAGCAACCCGAGCAGCGCCAGCAACTTTGGCAACTGGCCCGCGAAGGCGACGATGCAGCGCTGGTGCGGCGCCTGAGCAACGACCTGCAGCGCCCCTGCCTTGAAACGGTCGACTGGCTGTCACATCAAGACCCGGACCTGGCCCGGGAACAGTTCAAGGCCTGCCCCGCCAACGCCGACCCTCAGGCCTATGCCGTGCTCAAGCAGCGCCTGTATGGCGCCCCGCCGCAGCCCCCGCAGCCGCGCACCGCCGCAGAATGGGAACAACGCTATCGGCAGACCGGCGACCT > NC_002947/3908524‑3908820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |