Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,221,231 | G→T | 28.8% | intergenic (+46/+216) | PP_3699 → / ← PP_3700 | hypothetical protein/chromosome partitioning ATPase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,221,231 | 0 | G | T | 28.8% | 23.5 / 6.1 | 17 | intergenic (+46/+216) | PP_3699/PP_3700 | hypothetical protein/chromosome partitioning ATPase |
Reads supporting (aligned to +/- strand): ref base G (5/7); new base T (2/3); total (7/10) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCGTGCAACGTCGAGTTGACGCTGTTCACGCTGAAGATCCTGAAGCTTTGATCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAGCCACAATCTCATGCAACCGCTGCCGTACGAGTCGGCACAGTATTGCATCTCTAGCTCCGAGCATGCCCT > NC_002947/4221090‑4221366 | tGCGTGCAACGTCGAGTTGACGCTGTTCACGCTGAAGATCCTGAAGCTTTGATCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCTGACAGATg < 2:281062/150‑1 (MQ=255) gTGCAACGTCGAGTTGACGCTGTTCACGCTGAAGATCCTGAAGCTTTGATCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCTGTCCGATGccc > 2:497985/1‑150 (MQ=255) tGCAACGTCGAGTTGACGCTGTTCACGCTGAAGATCCTGAAGCTTTGATCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCTGTCCGATGcccc < 1:497985/150‑1 (MQ=255) gACGCTGTTCACGCTGAAGATCCTGAAGCTTTGATCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAAcctcagcctcag < 2:246267/150‑1 (MQ=255) tGAAGCTTTGATCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTAt > 1:453374/1‑150 (MQ=255) aTCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAAcctcagc < 2:478226/112‑1 (MQ=255) aTCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAAcctcagc > 1:478226/1‑112 (MQ=255) gCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGaa < 1:180854/150‑1 (MQ=255) cTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAg < 2:453374/150‑1 (MQ=255) gACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAGCCACAATCTCa > 1:463829/1‑135 (MQ=255) gACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAGCCACAATCTCa < 2:463829/135‑1 (MQ=255) gCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAGCCACAATCTCATGCAACCGCTGCCGTACGAGTCGGCACAGTa < 1:295015/150‑1 (MQ=255) gcTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAGCCACAATCTCATGCAACCGCTGCCGTACGAGTCGGCACAGTATTGCATCTCTAGCTCCGAGCATGCCCt > 2:315003/1‑150 (MQ=255) tCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGc > 1:302680/1‑65 (MQ=255) tCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGc < 2:302680/65‑1 (MQ=255) ttggggCATCTGTCCGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAGCCACAATCTCATGCAACCGCTGCCGTACGAGTCGGCACAGTATTGCa > 2:174790/3‑124 (MQ=255) ttggggCATCTGTCCGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAGCCACAATCTCATGCAACCGCTGCCGTACGAGTCGGCACAGTATTGCa < 1:174790/122‑1 (MQ=255) | TGCGTGCAACGTCGAGTTGACGCTGTTCACGCTGAAGATCCTGAAGCTTTGATCAGGGCTGATATGCTTGAGGAGTTTGAACAAGACTGCAAGTGAAGTGGCAAATGCTGACCGTCGTGCATAGCGCGCTCAGGGGGCATCGGACAGATGCCCCAACCTCAGCCTCAGCCTCAGCCTCAAAACCTAGCTATGGCCGAGCGCGCCGAAGCCACAATCTCATGCAACCGCTGCCGTACGAGTCGGCACAGTATTGCATCTCTAGCTCCGAGCATGCCCT > NC_002947/4221090‑4221366 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |