| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,875,244 | G→A | 23.5% | V129V (GTG→GTA) | PP_4284 → | transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,875,244 | 0 | G | A | 23.5% | 22.8 / 4.3 | 17 | V129V (GTG→GTA) | PP_4284 | transporter |
| Reads supporting (aligned to +/- strand): ref base G (4/9); new base A (2/2); total (6/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.61e-01 | |||||||||||
GCCTGCTGATGGGCCTGTACGCCAACTGGCCGGTGGGCCTGGCGCCGGGCATGGGGCTCAATGCCTTCTTTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATGGGGGCCGGCGTCGGATTGTTTCTCGGGCTGATCGGCCTGAAGACTGCAGGCA > NC_002947/4875102‑4875374 | gcctgcTGATGGGCCTGTACGCCAACTGGCCGGTGGGCCTGGCGCCGGGCATGGGGCTCAATGCCTTCTTTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCa < 1:348731/150‑1 (MQ=255) cctgcTGATGGGCCTGTACGCCAACTGGCCGGTGGGCCTGGCGCCGGGCATGGGGCTCAATGCCTTCTTTACCTAAAGCGTTGGCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCAt > 2:356488/1‑150 (MQ=255) tGTACGCCAACTGGCCGGTGGGCCTGGCGCCGGGCATGGGGCTCAATGCCTTCTTTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCNCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGt < 1:9407/150‑1 (MQ=255) aCGCCAACTGGCCGGTGGGCCTGGCGCCGGGCATGGGGCTCAATGCCTTCTTTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGa < 1:573829/150‑1 (MQ=255) cGCCAACTGGCCGGTGGGCCTGGCGCCGGGCATGGGGCTCAATGCCTTCTTTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGaa > 2:413488/1‑150 (MQ=255) gCCTGGCGCCGGGCATGGGGCTCAATGCCTTCTTTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGgctgc < 1:526444/150‑1 (MQ=255) ggggCTCAATGCCTTCTTTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGt < 1:413488/150‑1 (MQ=255) agggcttctgTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTgc < 2:373064/146‑1 (MQ=255) cTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTATTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATggg > 1:320221/1‑150 (MQ=255) cTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTATTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATggg > 1:320204/1‑150 (MQ=255) cccGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATGGGGGcc < 1:3995/149‑1 (MQ=255) ggggCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGaa < 1:422754/60‑1 (MQ=255) ggggCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGaa > 2:422754/1‑60 (MQ=255) cGGTATTCGTCTCGGGCGTATTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATGGGGGCCGGCGTCGGATTGTTTCTCGGGCTGATCGGCCTGAAGACTGCAGGca < 2:320204/150‑1 (MQ=255) cGGTATTCGTCTCGGGCGTATTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATGGGGGCCGGCGTCGGATTGTTTCTCGGGCTGATCGGCCTGAAGACTGCAGGca < 2:320221/150‑1 (MQ=255) tcGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATGGGGGCCGGCGTCGGATTGTTTCTCGGGCTGATCGGCCTGAAGACTGCAGGc < 2:362714/138‑1 (MQ=255) tcGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATGGGGGCCGGCGTCGGATTGTTTCTCGGGCTGATCGGCCTGAAGACTGCAGGc > 1:362714/1‑138 (MQ=255) | GCCTGCTGATGGGCCTGTACGCCAACTGGCCGGTGGGCCTGGCGCCGGGCATGGGGCTCAATGCCTTCTTTACCTACACCGTGGTCGGCACCATGGGCTACAACTGGGAAACGGCGCTGGGGGCGGTATTCGTCTCGGGCGTGTTGTTCATGTTCCTGACCTTGTCGAAAGTGCGCGAATGGCTGCTCAACAGCATTCCGGTCAGCCTGCGCCATGCCATGGGGGCCGGCGTCGGATTGTTTCTCGGGCTGATCGGCCTGAAGACTGCAGGCA > NC_002947/4875102‑4875374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |