Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,406,104 | C→G | 12.9% | A184A (GCG→GCC) | PP_4750 ← | amino acid ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,406,104 | 0 | C | G | 12.9% | 88.9 / 6.1 | 31 | A184A (GCG→GCC) | PP_4750 | amino acid ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base C (19/8); new base G (2/2); total (21/10) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.77e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 |
AGCACAAAGCCCTTCCACAACTCCGGCAACCATTGCATCCACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAGGTGGCTGAGGTGGGAATGGCGAT > NC_002947/5405956‑5406247 | aGCACAAAGCCCTTCCACAACTCCGGCAACCATTGCATCCACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTGTCAACGTGGCCGACAGCCAACTAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCAccgccgccg < 2:528217/150‑1 (MQ=255) acaAAGCCCTTCCACAACTCCGGCAACCATTGCATCCACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCgg > 1:539452/1‑150 (MQ=255) aaCTCCGGCAACCATTGCATCCACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGc > 1:563331/1‑150 (MQ=255) tCCGGCAACCATTGCATCCACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGACCt > 1:60641/1‑150 (MQ=255) ccATTGCATCCACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGtt > 1:603435/1‑150 (MQ=255) cATCCACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCtgt < 2:574390/150‑1 (MQ=255) ccACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGaa > 1:608721/1‑150 (MQ=255) cGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTgg < 2:539452/150‑1 (MQ=255) gCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCa > 2:57080/1‑150 (MQ=255) tCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCaa > 1:58916/1‑150 (MQ=255) ccTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAAc > 2:527574/1‑150 (MQ=255) tctGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGc > 2:488919/1‑150 (MQ=255) cGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGa < 2:603435/150‑1 (MQ=255) ccAACGAGAGAACAAGGCCACTGGCACGCTGATCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTg < 1:192173/87‑1 (MQ=255) ccAACGAGAGAACAAGGCCACTGGCACGCTGATCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTg > 2:192173/1‑87 (MQ=255) aaCGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGt > 1:58250/1‑150 (MQ=255) gagagaACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAgg < 1:199793/135‑1 (MQ=255) gagagaACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAgg > 2:199793/1‑135 (MQ=255) aGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGc > 1:420155/1‑150 (MQ=255) ggCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAGAACTCGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGcc > 1:38792/1‑150 (MQ=255) ccACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAgg < 1:519045/66‑1 (MQ=255) ccACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAgg > 2:519045/1‑66 (MQ=255) aCGCTGAGCACCAGGTACACCACCGCCGCCGCGGAGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAg > 2:216409/1‑150 (MQ=255) gtctacaccGCGGCGGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGc > 2:367841/6‑124 (MQ=255) gtctacaccGCGGCGGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGc < 1:367841/119‑1 (MQ=255) tctacaccGCGGCGGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAg < 2:178500/94‑1 (MQ=255) tctacaccGCGGCGGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAg > 1:178500/5‑98 (MQ=255) acacCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAGGTGGCTGAGGTGGGaa > 2:401347/1‑150 (MQ=255) accGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAGGTGGCTGAGGTGGGAATGGc > 2:263335/1‑149 (MQ=255) accGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAGGTGGCTGAGGTGGGAATGGc > 2:263257/1‑149 (MQ=255) accGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAGGTGGCTGAGGTGGGAATGGc < 1:263335/149‑1 (MQ=255) accGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAGGTGGCTGAGGTGGGAATGGc < 1:263257/149‑1 (MQ=255) cgccgccgcGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAGGTGGCTGAGGTGGGAATGGCGAt < 1:401347/150‑1 (MQ=255) | AGCACAAAGCCCTTCCACAACTCCGGCAACCATTGCATCCACATCGTCAGCAGTTCGCTCATCGGGCAATCCTCTGTTTCAACGTGGCCGACAGCCAACGAGAGAACAAGGCCACTGGCACGCTGAGCACCAGGTACACCACCGCCGCCGCGGTGTAGACGCTCAGGCCCTGAAAGGTTTGCTGTGAAACCTGGTAAGCCTGAAAGCTGATTTCACCAACGCCAATCGTCGAGGCCACGGCCGAGTCCTTGAGCAGGCCAATGGCGTAGGTGGCTGAGGTGGGAATGGCGAT > NC_002947/5405956‑5406247 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |