| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,011,800 | A→G | 11.1% | E199G (GAG→GGG) | rep → | single‑stranded DNA dependent ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,011,800 | 0 | A | G | 11.1% | 92.0 / 3.3 | 36 | E199G (GAG→GGG) | rep | single‑stranded DNA dependent ATPase |
| Reads supporting (aligned to +/- strand): ref base A (17/15); new base G (2/2); total (19/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
CCAGAAGCCCTGGAAAAGGCGCGCAACCCGCGCGAGCAGACCGCCGCCATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATGCGCAACCAGTTTACCGTGGTGGGCGACGACGACCAGTCGAT > NC_002947/6011652‑6011944 | ccAGAAGCCCTGGTAAAGGCGCGCAACCCGCGCGAGCAGACCGCCGCCATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAg > 2:164904/1‑150 (MQ=255) cccTGGAAAAGGCGCGCAACCCGCGCGAGCAGACCGCCTCCATCGTCTACTCCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGTACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTgg < 2:96466/150‑1 (MQ=255) ccTGGAAAAGGCGCGCAACCCGCGCGAGCAGACCGCCGCCATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCTCGGGGTGCtcct > 2:385038/1‑147 (MQ=255) ccTGGAAAAGGCGCGCAACCCGCGCGAGCAGACCGCCGCCATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGa > 1:106454/1‑150 (MQ=255) cTGGAAAAGGCGCGCAACCCGCGCGAGCAGACCGCCGCCATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCTCGGGGTGCtcctg < 1:385038/150‑5 (MQ=255) tGGAAAAGGCGCGCAACCCGCGCGAGCAGACCGCCGCCATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAgc > 2:81960/1‑150 (MQ=255) tGGAAAAGGCGCGCAACCCGCGCGAGCAGACCGCCGCCATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAgc > 1:22610/1‑150 (MQ=255) gccATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGAc < 1:555284/150‑1 (MQ=255) tCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACctg < 2:430477/134‑1 (MQ=255) tCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACctg > 1:430477/1‑134 (MQ=255) cTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCa < 1:528261/150‑1 (MQ=255) aCTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGaca > 2:256419/1‑147 (MQ=255) aCTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGaca < 1:256419/147‑1 (MQ=255) aGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACcgcg > 2:233384/1‑108 (MQ=255) aGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACcgcg < 1:233384/108‑1 (MQ=255) gcACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACgccagcc > 2:361859/1‑150 (MQ=255) tCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTgg < 1:257130/89‑1 (MQ=255) tCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTgg > 2:257130/1‑89 (MQ=255) aGGCGTTCAACGCGGTGGACTACGACGACCTGACCCAGACGCCGTTCAAGCTGTTCCAGGACAACCCCGAGGTGCTTGGGATGGAGCAGAACCGCGTGAGCTACCAGAGGCGGGGCCAATCCGAGGACACCCACGCCAGCCTGTatcagc > 2:39399/1‑145 (MQ=255) ggCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGaa < 1:262871/90‑1 (MQ=255) ggCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGaa > 2:262871/1‑90 (MQ=255) gacgacCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATg > 2:602482/1‑150 (MQ=255) tGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGc > 1:231090/1‑132 (MQ=255) tGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGc < 2:231090/132‑1 (MQ=255) cTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAg < 1:121916/90‑1 (MQ=255) cTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAg > 2:121916/1‑90 (MQ=255) cGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATGCGCAACCAGTTTACCgtgg < 1:316255/150‑1 (MQ=255) ggTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATGCGCAACCAGTTTACCgtggt < 1:464512/150‑1 (MQ=255) gTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATGCGCAACCAGTTTACCgtggtg > 1:531694/1‑150 (MQ=255) aaGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACctgctg < 2:132580/105‑1 (MQ=255) aaGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACctgctg > 1:132580/1‑105 (MQ=255) gCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATGCGCAACCAGTTTACCGTGGTGGGcga > 1:372500/1‑150 (MQ=255) tccaGCACCTCGGGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACctgctg > 2:154518/4‑95 (MQ=255) tccaGCACCTCGGGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACctgctg < 1:154518/92‑1 (MQ=255) aCCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATGCGCAACCAGTTTACCGTGGTGGGCGACGACGACCAGTCGa < 1:602482/150‑1 (MQ=255) ccccGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATGCGCAACCAGTTTACCGTGGTGGGCGACGACGACCAGTCGAt < 1:418785/150‑1 (MQ=255) | CCAGAAGCCCTGGAAAAGGCGCGCAACCCGCGCGAGCAGACCGCCGCCATCGTCTACACCCACTATCAGCGCACGCTCAAGGCGTTCAACGCGGTGGACTTCGACGACCTGATCCTGCAGCCGGTCAAGCTGTTCCAGGAGCACCCCGAGGTGCTGGAGCGCTGGCAGAACCGCGTGCGTTACCTGCTGGTGGACGAATACCAGGACACCAACGCCAGCCAGTACCTGCTGGTGAAAATGCTGATCGGCATGCGCAACCAGTTTACCGTGGTGGGCGACGACGACCAGTCGAT > NC_002947/6011652‑6011944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |