| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 941,936 | A→G | 14.1% | V1230A (GTC→GCC) | PP_0806 ← | surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 941,936 | 0 | A | G | 14.1% | 83.4 / 3.5 | 34 | V1230A (GTC→GCC) | PP_0806 | surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (15/14); new base G (3/2); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCC > NC_002947/941797‑942085 | cTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGt < 1:570688/150‑1 (MQ=40) gtgtGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTa > 1:211515/1‑150 (MQ=255) tgtgATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAg > 1:498370/1‑150 (MQ=255) tgATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGt > 2:339963/1‑150 (MQ=255) ggCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgcagc > 2:173769/1‑150 (MQ=255) tgAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATcgc > 2:154420/1‑150 (MQ=255) tCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACt < 2:530225/150‑1 (MQ=255) gTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc < 2:540333/130‑1 (MQ=255) gTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGgc > 1:540333/1‑130 (MQ=255) cggcATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTcgc‑cgc < 2:211515/150‑1 (MQ=255) cATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCAGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGAc < 1:499853/150‑1 (MQ=255) tCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGACACTGGCGACGCCGGTGCCAATTAGGTTGCCGGCAGGATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCg > 1:347651/1‑150 (MQ=255) tCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGACGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCg > 1:581433/1‑150 (MQ=255) tGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGc < 2:498370/150‑1 (MQ=255) ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGaaa > 2:354518/1‑133 (MQ=255) ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGaaa < 1:354518/133‑1 (MQ=255) ttCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCaa > 2:165984/1‑150 (MQ=255) ccTAGGCAGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAg < 1:410255/150‑1 (MQ=255) tGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGGGCGTTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTc > 1:339074/1‑150 (MQ=255) ggCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCgg < 1:523209/150‑1 (MQ=255) ccGGCGAGAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGtt < 2:39471/150‑1 (MQ=255) gCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGGCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTtgtg > 2:504198/1‑150 (MQ=255) cGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGACGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGc < 1:339963/150‑1 (MQ=255) gACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGa < 1:572207/115‑1 (MQ=255) gACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGa > 2:572207/1‑115 (MQ=255) ggTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAggcgg > 2:39953/1‑150 (MQ=255) gAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTc > 1:504025/1‑150 (MQ=255) aaCAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCAGGC‑CGCACAAGATGGGGAAAATGGATGTCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGGAGCAAGTCg > 1:43995/1‑150 (MQ=25) taattggCACCGGCGTCGTCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCaa < 1:473246/135‑1 (MQ=21) taattggCACCGGCGTCGTCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCaa > 2:473246/6‑140 (MQ=21) ccGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAg < 1:154420/150‑1 (MQ=255) tggCACCGGCGTCGTCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACgg > 2:13712/2‑57 (MQ=25) tggCACCGGCGTCGTCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACgg < 1:13712/56‑1 (MQ=25) cGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGa < 2:581433/150‑1 (MQ=255) acgacgCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGccc > 1:574742/1‑150 (MQ=255) | CTCGGGCGGTGTGATATCCGGGGCTGTGAACTCCAGCGGTATCGAACTGTTGCCGGCGGCATCCACCAGACGCACGTCGAGTGCTTCACCATTGGCCTGGGCCGGCGACAGGGTGAGGCTGAACAGGCCGTCGGCACCGACGACGCCGGTGCCAATTAGGTTGCCGGCAGCATCGCGCACTTGCACGGTAGCGCCGGGCTCGC‑CGCGACCGGTGAAAGTGACGCCATCGGCCAAGGCCAGGTCAGTCGGTTGTGCAGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCC > NC_002947/941797‑942085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |