| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 960,155 | A→G | 16.3% | intergenic (+10/+116) | PP_0821 → / ← selU | hypothetical protein/tRNA 2‑selenouridine synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 960,155 | 0 | A | G | 16.3% | 63.2 / 4.4 | 30 | intergenic (+10/+116) | PP_0821/selU | hypothetical protein/tRNA 2‑selenouridine synthase |
| Reads supporting (aligned to +/- strand): ref base A (11/14); new base G (2/3); total (13/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
CCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGTTCTATTTGCGCGGTTGGCGCAGCGCCCGGGCCTTG > NC_002947/960010‑960304 | ccGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCa < 2:401335/150‑1 (MQ=255) tGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGa < 1:71495/150‑1 (MQ=255) tGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACTTGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTg < 2:480582/150‑1 (MQ=255) gCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGc > 2:339528/1‑150 (MQ=255) cAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACAttt < 2:531599/150‑1 (MQ=255) cAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACAttt < 1:322485/150‑1 (MQ=255) gCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCa > 1:175213/1‑150 (MQ=255) cAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCGGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGc > 1:122497/1‑150 (MQ=255) cAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCGGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGc > 1:122450/1‑150 (MQ=255) ccTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAacaaagg > 1:367155/1‑146 (MQ=255) ccTGGAGCAGCTGGAAGGTGGCAGCTGCATCATGGACATCACTGGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCgg > 2:559717/1‑150 (MQ=255) ggAAGGTGGCAGACGCATCATGGAGATAACCAGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCTTGGGCAGTAGCGCCTGTCTGGGCAGGATTGGCCCACATTTGCAGGCGCGGGTTCAGCAGCGACCACCGGCAAAGCCGgtgt < 2:250521/150‑1 (MQ=255) cTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGt < 2:474373/150‑1 (MQ=255) aTGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTcgcg > 2:582303/1‑150 (MQ=255) tGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCgg < 2:112850/150‑1 (MQ=255) gcgACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAAc < 1:269334/150‑1 (MQ=255) gcgcTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCGGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑c < 2:122450/150‑1 (MQ=255) gcgcTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCGGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑c < 2:122497/150‑1 (MQ=255) ggAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAgg < 2:514300/150‑1 (MQ=255) aCTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCGGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTa < 1:582303/150‑1 (MQ=255) aCTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTa > 1:363252/1‑150 (MQ=255) gCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCGTGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGtt > 2:459136/1‑150 (MQ=255) ggTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGAAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGTTCTa < 1:559717/150‑1 (MQ=255) cccTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑c < 1:567109/122‑1 (MQ=255) cccTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑c > 2:567109/1‑122 (MQ=255) cccTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGTTCTATTTGCGCgg > 2:527363/1‑150 (MQ=255) tAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGTTCTATTTGCGCGGTTGGCGCAgc < 1:195104/150‑1 (MQ=255) tGTTCAGTGATGATTGTCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGTTCTATTTGTGCGGTTGGCGCAGCGCCCggg > 2:316400/1‑150 (MQ=255) gTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCTGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGTTCTATTTGCGCGGTTGGCGCAGCGCCCGGGc < 1:525918/150‑1 (MQ=255) ttCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGTGTGGCCTTCAAACAGGCCCAA‑CCGCTGGCTGTTGGGTACTGGTTCTATTTGCGCGGTTGGCGCAGCGCCCGGGcc > 1:138935/1‑150 (MQ=255) aGGCGTGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGTTCTATTTGCGCGGTTGGCGCAGCGCCCGGGCCTTg < 1:459136/150‑1 (MQ=255) | CCGTGATGGCAATTGCCAGTTCCATGTACAGGCCAGTGGCGGGACCCTGGCGCAGCTGGAAGGTGGCAGCTGCATCATGGACATGACCCGCGACCGCGCTGCGGAACTGGAGCGGGTGCTTAGCCCTGGGCAGTAGCGCCTGTTCAGGCATGATTGGCCCACATTTGCAGGCGCGGGTTCAGCCGCGAACACCGGCTTTGCCGGTGTCATGCTCCGCGTGGCCTTCTTCGCGGGTGAACCCGCT‑CCTACAGGGTACTGGTTCTATTTGCGCGGTTGGCGCAGCGCCCGGGCCTTG > NC_002947/960010‑960304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |