| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,190,662 | G→A | 19.9% | G60R (GGG→AGG) | xcpX → | type II secretion system protein K |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,190,662 | 0 | G | A | 19.9% | 38.2 / 3.1 | 20 | G60R (GGG→AGG) | xcpX | type II secretion system protein K |
| Reads supporting (aligned to +/- strand): ref base G (9/7); new base A (2/2); total (11/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGC > NC_002947/1190520‑1190804 | gatggtgatggtGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCTGCCCGGCATAGGCCAGGCCGGc < 2:460656/150‑1 (MQ=255) gtggtgCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGAc < 2:524465/150‑1 (MQ=255) aTGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCa > 2:581847/1‑110 (MQ=255) aTGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTc > 2:458512/1‑150 (MQ=255) aTGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGCTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCa < 1:581847/110‑1 (MQ=255) tggtggAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCt > 2:7146/1‑150 (MQ=255) tggAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCTGCCCGGCATAGGCCAGGCCGGc > 1:590954/1‑100 (MQ=38) tggAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCTGCCCGGCATAGGCCAGGCCGGc < 2:590954/100‑1 (MQ=38) ggCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGc < 2:277870/150‑1 (MQ=255) ccTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTgg > 2:492534/1‑150 (MQ=255) gctgcACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCa < 1:264482/150‑1 (MQ=255) cACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGgcg > 1:489499/1‑150 (MQ=255) aGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGt > 2:581673/1‑150 (MQ=255) gAGGGCAGGGGCGGGCCGTGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGc < 2:66476/150‑1 (MQ=255) gTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCgg < 1:492534/150‑1 (MQ=255) ggCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCa > 1:299366/1‑150 (MQ=255) agggcctgccCGGCATAGGCCAGGCCGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGc > 1:112197/3‑150 (MQ=255) ggccggccTGGCCTATGCCGGGCAGGCCCTGCGTAACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCtt > 1:292906/1‑150 (MQ=255) cctATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATg < 2:489499/150‑1 (MQ=255) ctATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGc > 2:426177/1‑150 (MQ=255) | GATGGTGATGGTGGTGCTGGCAATGCTGGCGGCGGGCATGGCCTGGCTGGTGGAAGATGGCCGGCGTCAGGTCGACGAAGTGCGCCTGCTGCACCAGCGAGTGCAGGTGCGGGCCATGGAGCAGGCCGGCCTGGCCTATGCCGGGCAGGCCCTGCGTGACCCCGCCTGGCGGCTCAGTCCGCTGTTCTGGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGC > NC_002947/1190520‑1190804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |