| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,385,534 | Δ69 bp | coding (861‑929/1266 nt) | oprD ← | basic amino acid specific porin OprD |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1385534 | 1385602 | 69 | 34 [0] | [0] 33 | oprD | basic amino acid specific porin OprD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1385533 | 0 (0.000) | 31 (1.290) | 24/258 | 0.2 | 100% | coding (930/1266 nt) | oprD | basic amino acid specific porin OprD |
| ? | NC_002947 | 1385603 = | 0 (0.000) | coding (860/1266 nt) | oprD | basic amino acid specific porin OprD | |||||
CCGGCGACGTTGGCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1385384‑1385533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCTCTTGGTGTCATAGATGTTGAAGTCGAACACCAGGCCT > NC_002947/1385603‑1385740 CCGGCGACGTTGGCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTAGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGG < 1:188267/150‑1 GCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGA < 1:256790/150‑1 TCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCG > 1:42558/1‑150 TAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAA > 1:81100/1‑125 TAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAA < 2:81100/125‑1 AACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGA < 2:348391/131‑1 AACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGA > 1:348391/1‑131 GGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCG > 2:278592/1‑150 TCATGAAGGTCAGGCCTGGAATGCCGTATTCGACCGAGTGCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACA > 1:147609/1‑150 AGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCG > 1:218837/1‑150 GGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTG < 2:618493/150‑1 AATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACAGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTC < 2:264063/150‑1 TGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCA > 1:123100/1‑150 CGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCT > 1:469326/1‑150 CGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTC > 2:606933/1‑145 CGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTC < 1:606933/145‑1 ATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGT < 1:278592/150‑1 GCGAAGTTCAGGTAGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCA > 2:308599/1‑150 GTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAA < 2:42558/150‑1 GTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGCCGACGTCGAA < 2:310653/150‑1 TCGTAGCGAGCCCGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGG > 2:125435/1‑150 GCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCA < 2:149801/150‑1 GCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCA < 1:308599/150‑1 TGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAG < 1:27468/150‑1 TTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCT > 2:407109/1‑150 TCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCTCT < 1:407109/150‑1 CTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCTCTT < 2:469326/150‑1 TCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCTCTTG > 1:202528/1‑150 TCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCTCTTG > 1:293884/1‑150 GGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCTCTTGGTGTCATA < 2:293884/150‑1 CACGGAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCTCTTGGTGTCATAGATGTTGAAGTCGAACACCAG < 1:125435/150‑1 GAGTTGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCACGGTACTCGGCAGAGCCTTCGCTCTTGGTGTCATAGATGTTGAAGTCGAACACCAGGCtt < 2:123100/150‑3 GGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGC > 1:610722/1‑80 GGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGC < 2:610722/80‑1 CCGGCGACGTTGGCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCTGCCAGGATTTCTCGTCTTCGGCGTTGAAGTCGGAGCGGGCCACGGAGTTGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1385384‑1385533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTCGCCATCGAAGGCGCGGTACTCGGCAGAGCCTTCGCTCTTGGTGTCATAGATGTTGAAGTCGAACACCAGGCCT > NC_002947/1385603‑1385740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |