New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4861197	20 (0.790)	7 (0.340)	7/222	1.5	29.6%	intergenic (‑103/+134)	ligA/PP_4275	DNA ligase/cell division protein ZipA
	?	NC_002947	= 4861238	17 (0.820)					intergenic (‑144/+93)	ligA/PP_4275	DNA ligase/cell division protein ZipA

GAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGG  >  NC_002947/4861053‑4861343                                                                                                                                                 |                                                                                                                                                    gAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCtacag                                                                                                                                                <  1:159501‑M1/150‑6 (MQ=255)   gCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAgg                                                                                                                                              <  2:365940/150‑1 (MQ=255)       ggCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGt                                                                                                                                          >  1:19710/1‑150 (MQ=255)                ttCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGccc                                                                                                                                 >  2:60159/1‑150 (MQ=255)                         aCGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGCGGGGTTCCAGGTGTCTGTTCACCGTGGTTGTCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGt                                                                                                                        <  2:552528/150‑1 (MQ=255)                           gggTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtga                                                                                                                      >  2:612639‑M1/1‑119 (MQ=255)                           gggTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCGCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGa                                                                                                                      <  2:204298/150‑1 (MQ=255)                            ggTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGCGTGGTTGGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGAt                                                                                                                     <  2:551645/150‑1 (MQ=255)                            ggTTTCGGCGGTCATGGGAAACTTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGAt                                                                                                                     <  1:189695/150‑1 (MQ=255)                                tCGGCGGTCATGGGATTTGCCGGCTCTTGCGAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTATCTGTGGTCTGTCCCAGCCTCTTCGCGTGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTAc                                                                                                                 <  1:500053/150‑1 (MQ=255)                                        cATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtggga                                                                                                         <  1:612639‑M1/150‑45 (MQ=255)                                              aTTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTAGGGTACCGGGTGTTTGTTGACTGTGCTTTTTTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggt                                                                                                   <  1:388540‑M2/150‑10 (MQ=255)                                                ttGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggttt                                                                                                 >  1:532864‑M1/1‑98 (MQ=255)                                                ttGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggttt                                                                                                 <  2:588641‑M2/150‑12 (MQ=255)                                                   tcttctCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACACGCTCCCACTAGTGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacc                                                                                              <  2:382363‑M2/150‑15 (MQ=255)                                                      tctcTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgc                                                                                           <  2:10120‑M2/150‑18 (MQ=255)                                                        tctTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgg                                                                                                     <  1:108443‑M1/138‑49 (MQ=255)                                                        tctTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgg                                                                                                     >  2:108443‑M1/1‑90 (MQ=255)                                                        tctTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcga                                                                                         <  2:471860‑M2/150‑20 (MQ=255)                                                          ttGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaag                                                                                       <  1:152886‑M2/150‑22 (MQ=255)                                                           tGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaaga                                                                                      <  2:532864‑M1/150‑64 (MQ=255)                                                              aaagcaaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggc                                                                                   <  1:149944‑M2/150‑26 (MQ=255)                                                                agcaaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg                                                                                 <  1:471860/150‑1 (MQ=255)                                                                      agagCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAg                                                                           <  2:149944/150‑1 (MQ=255)                                                                         gcagcTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCa                                                                        >  2:194141/1‑150 (MQ=255)                                                                           agcTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAac                                                                      >  1:282609/1‑150 (MQ=255)                                                                                  gggcgtgcgtgGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcggg                                                                                                    >  1:358538‑M2/5‑105 (MQ=255)                                                                                  gggcgtgcgtgGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcggg                                                                                                    <  2:358538‑M2/109‑9 (MQ=255)                                                                                    tggtgCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATAcc                                                            <  1:60159/150‑1 (MQ=255)                                                                                    tggtgCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGAGATATACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATGcc                                                            >  2:360456/1‑150 (MQ=255)                                                                                                                aCTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATACCCGAACCGGCCAGCACGCCCTCAGgctgc                                >  1:6911/1‑150 (MQ=255)                                                                                                                  tgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgg                                                                                                     <  2:446660‑M2/80‑8 (MQ=255)                                                                                                                  tgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgg                                                                                                     >  1:446660‑M2/1‑73 (MQ=255)                                                                                                                       cAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGACGAGGCCACCACAGCCACTGACGCCTACCTG‑TCAAGCCTGCACGCCCTCAGGCGGCTCTTTCg                         >  2:380675/1‑150 (MQ=255)                                                                                                                         gCCTCTTCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgcttt                        <  1:149944‑M1/150‑126 (MQ=255)                                                                                                                         gCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTc                       >  1:438983/1‑150 (MQ=255)                                                                                                                            tctTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgca                     <  2:532864‑M2/150‑88 (MQ=255)                                                                                                                             ctTCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaa                    <  1:152886‑M1/150‑130 (MQ=255)                                                                                                                               tCGCGGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaaga                  <  2:471860‑M1/150‑132 (MQ=255)                                                                                                                                 gcgGGTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagaga                <  2:10120‑M1/150‑134 (MQ=255)                                                                                                                                    ggTAAACCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcactagtgggagcgtgtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaaga             <  2:382363‑M1/150‑137 (MQ=255)                                                                                                                                     gTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcggg                                                                                                    <  2:157508‑M2/62‑9 (MQ=255)                                                                                                                                     gTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcggg                                                                                                    >  1:157508‑M2/1‑54 (MQ=255)                                                                                                                                      tAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAgc          <  2:6911/150‑1 (MQ=255)                                                                                                                                       aaaCCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaa          <  2:588641‑M1/150‑140 (MQ=255)                                                                                                                                       aaaCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaa          >  1:532864‑M2/1‑52 (MQ=255)                                                                                                                                         aCCCGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaaaaaagcacagtcaacaaacacccggtaccctacgcaccaccccaagctgctcttttgctttgcaagagaagacaaat        <  1:388540‑M1/150‑142 (MQ=255)                                                                                                                                          cccGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcacgccc                                            <  2:358538‑M1/113‑106 (MQ=255)                                                                                                                                          cccGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcacgccc                                            >  1:358538‑M1/1‑8 (MQ=255)                                                                                                                                          cccGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttac                                                                                               <  2:157508‑M1/62‑55 (MQ=255)                                                                                                                                          cccGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttac                                                                                               >  1:157508‑M1/1‑8 (MQ=255)                                                                                                                                          cccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATACCCGAACCGGCCAGTACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCtt      >  2:426282/1‑150 (MQ=255)                                                                                                                                           ccGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggccggcaca                                                                            <  2:446660‑M1/80‑74 (MQ=255)                                                                                                                                           ccGCTCCtacaggtacatcaccgccctagggcatgtgacgcccttgtgggagcgggtttacccgcgaagaggccggcaca                                                                            >  1:446660‑M1/1‑7 (MQ=255)                                                                                                                                           ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaaga                  >  2:108443‑M2/1‑48 (MQ=255)                                                                                                                                           ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaaga                  <  1:108443‑M2/138‑91 (MQ=255)                                                                                                                                             gCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCTTCTGGATCTGTCAGCGCTTCTg   <  2:282609/150‑1 (MQ=255)                                                                                                                                               tCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaatcccatg  <  1:612639‑M2/150‑107 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACG‑ATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGG  >  NC_002947/4861053‑4861343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.