Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,068,194 | 0 | A | T | 42.9% | 1.0 / 12.3 | 14 | intergenic (‑96/+25) | plsC/PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
Reads supporting (aligned to +/- strand): ref base A (4/4); new base T (2/4); total (6/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.27e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCTG > NC_002947/2068052‑2068340 | gtaaGAAAATGCAGCGCCATCAGGAACATACGCAATGAATAAAGCATGGTACCACTCACACCAGACGGTCGCGGGGCAGTGTACGTGTGTGCACTGGCTGGGGCAAACCTTGGTGCACGGCTGTTACGGCCCTTTCGCGGGCTTGCCcgc < 2:112290/148‑1 (MQ=255) gAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTTGCGGGCTTGCCCGCGaaa < 1:379004/150‑1 (MQ=255) gAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCTTGCCCGCGaaa < 1:28398/150‑1 (MQ=255) gAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGcc > 2:479887/1‑150 (MQ=255) aaTAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGTGGGCTAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCACTATGCTGCTGAt > 2:159147/1‑150 (MQ=255) aaGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTCTACGGGTGTGCACTGGCTGTGGCAACCCTTGTTGCAGGCCTGTTCCGGCCCTTTCGCGGCCAAGCCCGCGAAAAGGGCCCGTGCCGCTAGCCAATATGCTGCTGATCCAg < 1:253757/150‑1 (MQ=255) aGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGc < 1:289252/150‑1 (MQ=255) acacCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTcc > 1:274332/1‑150 (MQ=255) gggCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGcc < 2:29793/150‑1 (MQ=255) cTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTAGCTACGCTTGTCCAGCGCCCCCGAACGTCCTGGGCGGAGGTTCAGCGTGGTGTTCTTGTGCGCCAGCATGTTCAGc < 1:479887/150‑1 (MQ=255) cccTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCGGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTCTCAGCTTGGTGTTCTCCTGCGCCACCATGTTCCCCTTCTCCacc > 2:172016/1‑148 (MQ=255) cttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATc > 1:558150/3‑67 (MQ=21) cttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATc < 2:558150/65‑1 (MQ=21) ggCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCTg > 2:497436/1‑150 (MQ=255) | GCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGCTAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCGCTG > NC_002947/2068052‑2068340 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |