New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2078281 | 64 (1.150) | 13 (0.250) | 13/242 | 3.5 | 18.6% | intergenic (+23/+92) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
? | NC_002947 | = 2078364 | 53 (1.000) | intergenic (+106/+9) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCAC > NC_002947/2078139‑2078417 | cTGTATTTAGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGCTTTTGTGGTGGAGCAGTTTGGCGCGCAGGGGCTGGCGGGGCGGTTATATGCCCTGCAGGCAAGCTAGAGACTTATTGCCTGTGCCGGCC‑TTTTcgcg > 1:454202/1‑150 (MQ=255) tGTATTTCGCCGAGCACAAGCTTTTGCCGCGCAAGACCCGGGCGTTCATCTAGTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCgg < 2:657316/150‑1 (MQ=255) tGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCgg > 2:516040/1‑150 (MQ=255) tttCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGgccc > 2:1652/1‑150 (MQ=255) cGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGgcccgcc < 1:848358/150‑1 (MQ=255) gCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCAcc > 2:349704/1‑150 (MQ=255) caAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCgggcccgcgaaaag < 2:209388/150‑7 (MQ=255) caAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCcac > 1:750503/1‑150 (MQ=255) aaGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCgg < 1:587924/133‑1 (MQ=255) aaGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCgg > 2:587924/1‑133 (MQ=255) cGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCTCCCACAAGGaccccac < 2:1121636/150‑7 (MQ=255) gggCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATcaca > 1:810198/1‑150 (MQ=255) aaGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGccc < 1:349704/150‑1 (MQ=255) gACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTGTCGGGCCCGCCCGCAGCCACCGGGATATCACAGCCCTg > 1:1123117/1‑150 (MQ=255) gACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTg > 1:414571/1‑150 (MQ=255) gTTCAACGATTTTGTGGGGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTg < 2:186811/150‑1 (MQ=255) tCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCCCAGGGATATCACAGCCCTGAAGACAGTggg < 1:638965/150‑1 (MQ=255) cATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTgggg > 2:870758/1‑150 (MQ=255) aTCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGAGATTACAGCGCTGAAGACAGTAGGGt > 1:694790/1‑150 (MQ=255) gtggAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTcgcg > 2:153736/1‑90 (MQ=255) gtggAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTcgcg < 1:153736/90‑1 (MQ=255) gCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGCgcgggc > 1:1009410/1‑142 (MQ=255) gCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc < 2:1009410/142‑1 (MQ=255) cGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTggg < 2:1292541/122‑1 (MQ=255) cGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTggg > 1:1292541/1‑122 (MQ=255) gCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAaga < 2:810198/150‑1 (MQ=255) gCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGGGGGAGCGGGCGGGCCCGCGAAGAGGCCgg < 1:870758/150‑1 (MQ=255) gcggggcggTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTACCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGccc > 1:1392177/1‑96 (MQ=255) gcggggcggTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTACCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGccc < 2:1392177/96‑1 (MQ=255) ggggcggTTCGATGCCCTGCAGGCCTTTTAGAGTATTCTTGCCTGTGCCGGCC‑TTGTCGCGGTGCCGCCCCCACCCACAGGGATAGCACAGCCCTGAAGACAGTCGGGTCCTGGGGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGa < 1:294205/150‑1 (MQ=255) gggcggTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGac < 2:414571/150‑1 (MQ=255) gTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTtgt > 2:1098747/1‑109 (MQ=255) gTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTtgt < 1:1098747/109‑1 (MQ=255) ttCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGc > 1:109933/1‑134 (MQ=255) ttCGATCCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGc < 2:109933/134‑1 (MQ=255) gATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTTCGCGGGCCCGCCCGCACCCACAgg > 1:549453/1‑72 (MQ=255) gATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTTCGCGGGCCCGCCCGCACCCACAgg < 2:549453/72‑1 (MQ=255) tGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAg > 1:1387491/1‑63 (MQ=255) tGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAg < 2:1387491/63‑1 (MQ=255) ggtacccccTTGAGAGACTTTTTGCCTGTGCTGCCC‑TTTTCGCGGGCCCGCCCGCACCCCCAGGGATATCACCCCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAAc < 1:516040/144‑1 (MQ=255) ggCAGGCCCTTTAGGGAATTATGGCCTGGGCCGGCC‑GTTTGGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACACTGAAc < 2:1129722/149‑1 (MQ=255) cAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAgg < 2:91847/62‑1 (MQ=255) cAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAgg > 1:91847/1‑62 (MQ=255) cAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCACACCCACCGGGATATACCAGCCCTGACGACAGTGGCGTCCTTGTGGGGGCTGGCGCGCCCGCGAAGAGAACGGTTCAGACAACCTCGACAATGAACGa > 1:126144/1‑150 (MQ=255) gCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCgg < 1:1229887/40‑1 (MQ=255) gCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCgg > 2:1229887/1‑40 (MQ=255) gCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGa < 1:1126236/61‑1 (MQ=255) gCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGa > 2:1126236/1‑61 (MQ=255) cccTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCACGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATa < 2:303849/148‑1 (MQ=255) cccTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCACGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATa > 1:303849/1‑148 (MQ=255) tttAGATAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTggg < 2:716566/81‑1 (MQ=255) tttAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTggg > 1:716566/1‑81 (MQ=255) tttAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGtt < 2:1359599/120‑1 (MQ=255) tttAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATa > 1:1412824/1‑145 (MQ=255) tttAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATa < 2:1412824/145‑1 (MQ=255) tttAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGGGGGAGCGGGCGGGCCCGCGAAGAGGCCGGtt > 1:1359599/1‑120 (MQ=255) tttAGAGAATTAGTGCGTGTGCCGGCC‑TTTCCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCtgt < 1:732644/150‑1 (MQ=255) agaATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCAGCATCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCCGTGCGcc > 2:169343/1‑150 (MQ=255) attGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTg < 2:750503/150‑1 (MQ=255) ttGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATcaca > 2:1129487/1‑52 (MQ=255) ttGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATcaca < 1:1129487/52‑1 (MQ=255) tgtgCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGAc > 2:232914/1‑117 (MQ=255) tgtgCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTGGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGAc < 1:232914/117‑1 (MQ=255) gCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGgcaataatt > 2:183979/1‑103 (MQ=255) gCC‑TTTGCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGgcaataatt < 1:183979/108‑6 (MQ=39) c‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCAc > 2:343381/1‑138 (MQ=255) c‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCAc < 1:343381/138‑1 (MQ=255) | CTGTATTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCC‑TTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCAC > NC_002947/2078139‑2078417 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |