New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5816910 =	50 (0.890)	12 (0.250)	11/220	3.6	25.0%	intergenic (+40/+89)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816973 =	29 (0.600)					intergenic (+103/+26)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
Rejected: Coverage evenness skew score above cutoff.

TGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAAC  >  NC_002947/5816833‑5817121                                                                                                                                              |                                                                                                                                                     tgcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCCCCCACAAGTAGCGCGGCGCTCCCGCGCGCAGCCCACATACCCTTGGGAACGGGCGCGCCCGCCaa                                                                                                                                             >  2:1451233/1‑150 (MQ=255)  gcCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCGCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                                            <  2:804618/150‑1 (MQ=255)      aaaGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGc                                                                                                                                        <  1:1451233/150‑1 (MQ=255)        agagCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCt                                                                                                                                      <  1:580103/150‑1 (MQ=255)           gcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTg                                                                                                                                   <  1:1020699/150‑1 (MQ=255)           gcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTg                                                                                                                                   >  2:1020699/1‑150 (MQ=255)            cagcagcTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgg                                                                                                                                          >  1:121247/1‑142 (MQ=255)            cagcagcTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgg                                                                                                                                          <  2:121247/142‑1 (MQ=255)             agcagcTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCa                                                                                                                                 <  2:1173764/150‑1 (MQ=255)             agcagcTGAGTCTGGCCAAGCGTTAACCTGACCAGCCACCATGCTG‑CCCGGGTCCGTCGCGGGCACGCCCGTTTTTACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCa                                                                                                                                 <  1:329871/150‑1 (MQ=255)                     aGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGtactac                                                                                                                         <  1:906720/150‑1 (MQ=255)                             cAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                                                >  1:1466144/1‑135 (MQ=255)                             cAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                                                <  2:1466144/135‑1 (MQ=255)                                    tAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAc                                                                                                          <  1:327382/150‑1 (MQ=255)                                          gATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGc                                                                                                    >  2:201415/1‑150 (MQ=255)                                                        cGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTcc                                                                                                 <  1:542248/140‑1 (MQ=255)                                                        cGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTcc                                                                                                 >  2:542248/1‑140 (MQ=255)                                                        cGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                                       >  1:1427121/1‑150 (MQ=255)                                                        cGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                                       <  2:1372593/150‑1 (MQ=255)                                                                gCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGcc                                                                               >  2:469805/1‑150 (MQ=255)                                                                                      tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGccgg                                                                                                                                     <  1:361216/74‑3 (MQ=255)                                                                                      tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGccgg                                                                                                                                     >  2:361216/1‑72 (MQ=255)                                                                                        ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                       >  2:1378575/1‑150 (MQ=255)                                                                                          acaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCCTCCCCTccgc                                                     >  2:602962/1‑150 (MQ=255)                                                                                          acaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTAGGCGGCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccgc                                                     >  1:77637/1‑150 (MQ=255)                                                                                           caGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccgcc                                                    <  2:82564/150‑1 (MQ=255)                                                                                                            tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCAc                                   >  1:1339378/1‑150 (MQ=255)                                                                                                             cgcgcgCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCCCt                                  <  2:211136/150‑1 (MQ=255)                                                                                                                         acaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCCCCCCGCCCTGCATCACTGAAGACAACTgc                      >  2:1220050/1‑150 (MQ=255)                                                                                                                               cTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAAc                >  2:1343276/1‑150 (MQ=255)                                                                                                                                   tttcgCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCa                                                                  >  2:1292787/5‑96 (MQ=255)                                                                                                                                   tttcgCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCa                                                                  <  1:1292787/92‑1 (MQ=255)                                                                                                                                    ggAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTTAAGACAACTGCGCCAACCGccc           >  1:1026500/1‑150 (MQ=255)                                                                                                                                    ggAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCCGCATCCCTGAAGACAACTTCGCCCACCGccc           >  2:908778/1‑150 (MQ=255)                                                                                                                                       gCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTg                                         <  1:999297/117‑1 (MQ=255)                                                                                                                                       gCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTg                                         >  2:999297/1‑117 (MQ=255)                                                                                                                                          ggCGCGCACCCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTTCATCACCGAAAACAACCGCGCCAACccccccccccc     >  2:464629/1‑149 (MQ=255)                                                                                                                                            cgcgcCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGaa   <  1:201415/150‑1 (MQ=255)                                                                                                                                             gcgcCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAAc  <  1:1343276/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     TGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATC‑GGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAAC  >  NC_002947/5816833‑5817121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.