| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 499197 = | 77 (1.330) | 12 (0.250) | 11/218 | 3.5 | 14.0% | intergenic (+38/‑258) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | 499284 = | 85 (1.800) | intergenic (+125/‑171) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCATCATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/499369‑499197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcatgcccgctcccac‑‑aGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCA > NC_002947/499284‑499430 CCATCATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGT > 1:752362/1‑150 AAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCtg < 1:1179275/150‑3 ATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTC > 2:1306720/1‑150 TTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGGTTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGCTCAGCCCGAGAGATCAGCAGGCCAGGCCCGTTCCCGGGCAAGCCCGCTCC > 1:786630/1‑150 TTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCC < 2:1370370/150‑1 TTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGACCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATCCCCGCTCC > 2:497890/1‑150 TTTGTTGTAGGCAGCGCCCGACAAGGATGGCGGGATTGGAATGCCCGTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTCCGCGGGCATGCCCGCTCC < 2:786630/150‑1 TGTTGTAGGGATCGCCATACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCA < 1:155409/150‑1 TTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG > 2:814015/1‑133 TTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:814015/133‑1 TACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCG < 2:947760/117‑1 TACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCG > 1:947760/1‑117 GATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCC > 1:1173340/1‑111 GATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCC < 2:1173340/111‑1 GAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGC > 1:1145000/1‑93 GAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGC < 2:1145000/93‑1 CAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTA > 2:1260126/1‑150 CCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCC > 2:639750/1‑79 CCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCC < 1:639750/79‑1 TGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGAGTGCCCTCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTCCAA > 1:334283/1‑150 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGA > 1:715744/1‑150 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATG > 1:248285/1‑150 GAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGAT > 1:490254/1‑150 GCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATT > 1:906490/1‑150 GCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATC > 1:208023/1‑112 GCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATC < 2:208023/112‑1 CAGCCGTAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCGCCCACATAGGCTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTC < 1:1260126/150‑1 CAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAG < 2:715744/150‑1 CAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGG < 2:906490/150‑1 CAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGG < 2:334283/150‑1 TTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGA > 2:694268/1‑104 TTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGA < 1:694268/104‑1 GCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGTCGCTTGCGTCTCTTC < 2:19776/150‑1 GGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTA < 1:430262/150‑1 ATGCCCGCTCCCAC‑‑AGGTTTCATGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCT > 2:711626/1‑150 CCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT < 2:1304908/150‑1 GCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCC > 2:306258/1‑150 GCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCC > 1:606794/1‑150 TCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTA > 1:797644/1‑150 CAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGC > 2:686650/1‑150 AC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCA > 2:979980/1‑150 AC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGC < 2:1051432/124‑1 AC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGC > 1:1051432/1‑124 CCATCATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/499369‑499197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcatgcccgctcccac‑‑aGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCA > NC_002947/499284‑499430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |