New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5311227 =	NA (NA)	18 (0.320)	15/256	3.2	47.1%	noncoding (1503/1522 nt)	PP_16SG	16S ribosomal RNA
	?	NC_002947	5311239 =	21 (0.360)					noncoding (1491/1522 nt)	PP_16SG	16S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

CCTTATCAGGGGTGCGCTCTAACCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACACCGTGGTAACCGTCC  >  NC_002947/5311080‑5311293                                                                                                                                                    |                                                                   ccTTATCAGGGGTGCGCTCTAACCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAg                                                                  >  2:847036/1‑150 (MQ=255) ccTTATCAGGGGTGCGCTCTAACCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAg                                                                  <  1:696200/150‑1 (MQ=255)     aTCAGGGGTGCGCTCTAACCAACTGAGCTACAGACCTAAGAGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTc                                                              <  1:352544/150‑1 (MQ=255)       cAGGGGTGCGCTCTAACCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATTCAGCCGCAGGTTccc                                                            <  1:270095/150‑1 (MQ=255)             tGCGCTCTAACCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACgg                                                      <  2:1003351/150‑1 (MQ=255)                  tctAACCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGACTCAAGCACTTCGTGAGGTAGTTCATCAGCAGGTTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTAcc                                                 >  2:1279136/1‑150 (MQ=21)                      aCCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCa                                                                   >  2:168846/1‑128 (MQ=255)                      aCCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCa                                                                   <  1:168846/128‑1 (MQ=255)                        cAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTa                                           <  2:1140543/150‑1 (MQ=255)                        cAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTa                                           <  1:238615/150‑1 (MQ=255)                         aaCTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGCTTGAGATTGCAATCCGAACTAAGGAATTCGGCAGGTATCTCATCAGCAGGCTGATGTAGTCGATGAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTAc                                          >  1:1140543/1‑150 (MQ=9)                                cTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCa                                   <  1:830530/150‑1 (MQ=255)                                 tACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGCCTTCAc                                  >  1:20403/1‑150 (MQ=255)                                      aCCTAAGGGTAAAACTTTGGGTCTTGGTTGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAg                             >  1:574607/1‑150 (MQ=255)                                        cTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGtt                                            >  1:69035/1‑133 (MQ=255)                                        cTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGtt                                            <  2:69035/133‑1 (MQ=255)                                        cTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTc                           >  2:1311045/1‑150 (MQ=255)                                         tAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGt                                             >  2:640986/1‑131 (MQ=255)                                         tAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGt                                             <  1:640986/131‑1 (MQ=255)                                             ggTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGaa                      >  1:159951/1‑150 (MQ=255)                                                  aaCTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATcaca                 <  1:215909/150‑1 (MQ=255)                                                    cTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACAcc               <  1:1321462/150‑1 (MQ=255)                                                    cTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACAcc               <  1:1329621/150‑1 (MQ=255)                                                       tGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACACCGTg            <  2:159951/150‑1 (MQ=255)                                                           tCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACACCGTGGTaa        >  1:58844/1‑150 (MQ=38)                                                           tCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACACCGTGGTaa        >  2:970932/1‑150 (MQ=38)                                                                 tCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACACCGTGGTAACCGTcc  >  1:463499/1‑150 (MQ=34)                                                                                                                                                    |                                                                   CCTTATCAGGGGTGCGCTCTAACCAACTGAGCTACAGACCTAAGGGTAAAACTTTGGGTCTTGATCGTCTTTATACAATGAATCAAGCAATTCGTGTGGGAGCTCATCAGCAGGCTGATGTCGTCGATTAAGGAGGTGATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACACCGTGGTAACCGTCC  >  NC_002947/5311080‑5311293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.