New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 38085857 (0.810)16 (0.280) 15/222 3.7 25.6% intergenic (+45/+64) gbcB/PP_0317 glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
?NC_002947 = 380892 46 (0.790)intergenic (+79/+30) gbcB/PP_0317 glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
Rejected: Coverage evenness skew score above cutoff.

GTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCG  >  NC_002947/380709‑381004
                                                                                                                                                     |                                                                                                                                                  
gTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCcaca                                                                                                                                                    <  1:10933/150‑1 (MQ=255)
 tGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                                                                   <  1:1319323/150‑1 (MQ=255)
  ggAAATGGAGCACAACGGCGGGATTACCGAATAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTCCGCGGGCACGCCCGCTCCCACAgg                                                                                                                                                  <  1:805704/150‑1 (MQ=255)
  ggAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                                                                                  <  1:1024498/150‑1 (MQ=255)
  ggAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                                                                                  <  1:227304/150‑1 (MQ=255)
     aaTGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGtt                                                                                                                                               <  2:555344/150‑2 (MQ=255)
      aTGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCa                                                                                                                                              <  2:1190770/150‑1 (MQ=255)
                  ggcggGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCa                                                                                                                                  <  1:998846/150‑1 (MQ=255)
                   gcggGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAg                                                                                                                                 <  1:373324/150‑1 (MQ=255)
                          tACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCg                                                                                                                          <  2:1088101/150‑1 (MQ=255)
                          tACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCg                                                                                                                          <  2:1351895/150‑1 (MQ=255)
                             cGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAg                                                                                                                                 <  1:1620213/140‑1 (MQ=255)
                             cGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAg                                                                                                                                 >  2:1620213/1‑140 (MQ=255)
                                   ggACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCtt                                                                                                                 <  2:1140230/150‑1 (MQ=255)
                                    gACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCa                                                                                                                                  <  1:240245/132‑1 (MQ=255)
                                    gACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCa                                                                                                                                  >  2:240245/1‑132 (MQ=255)
                                    gACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGt                                                                                                                        >  2:40114/1‑142 (MQ=255)
                                    gACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGt                                                                                                                        <  1:40114/142‑1 (MQ=255)
                                      cGAAGCCGAGGGCTACATCCTGTCGTGCTGCGGCGTGCGGAAAGGGGAAGTGCGGATCGATTACTGAGCCAGTGGCCAGTCTGGCTTCCTCGCGGGCGCGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtg                                                                                                              <  2:525901/150‑1 (MQ=255)
                                       gAAGCCGAGTGTTACATCCTGTCGTGCTGTAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGAGCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGGCCGCTCCCACAGGGTCATCGCGATCTTCAGGACTGCGGTGAACCTTGTgg                                                                                                             <  2:211454/150‑1 (MQ=255)
                                       gAAGCCGAGGGCTCCATCCTGTCGTTCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTgg                                                                                                             <  2:1409286/150‑1 (MQ=255)
                                       gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGa                                                                                                                               >  1:1717641/1‑132 (MQ=255)
                                       gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGa                                                                                                                               <  2:1717641/132‑1 (MQ=255)
                                       gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTgg                                                                                                             <  1:1530888/150‑1 (MQ=255)
                                       gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTgg                                                                                                             <  1:1258503/150‑1 (MQ=255)
                                       gAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGATCTCTTCAGGGCTGCGGCGAACCtggtgg                                                                                                             >  2:1409441/1‑150 (MQ=255)
                                                   tACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtg                                                                                                              >  2:717765/1‑137 (MQ=255)
                                                   tACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtg                                                                                                              <  1:717765/137‑1 (MQ=255)
                                                   tACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGc                                                                                                 <  1:1172209/150‑1 (MQ=255)
                                                    aCATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCCTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGcc                                                                                                <  1:1409441/150‑1 (MQ=255)
                                                         cTGTCTTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGa                                                                                           <  1:1601538/150‑1 (MQ=255)
                                                          tGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGAc                                                                                          >  2:1727933/1‑150 (MQ=255)
                                                                         tGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCCCGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTg                                                                                                                       >  2:680718/1‑106 (MQ=255)
                                                                         tGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTg                                                                                                                       <  1:680718/106‑1 (MQ=255)
                                                                                      tgtgCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCa                                                              <  1:505429/150‑1 (MQ=255)
                                                                                        tgCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTgg                                                                                                             <  1:1148532/101‑1 (MQ=255)
                                                                                        tgCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTgg                                                                                                             >  2:1148532/1‑101 (MQ=255)
                                                                                                           cAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCa                                         >  1:1700674/1‑150 (MQ=255)
                                                                                                                gCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCcacaag                                                                                                                                                  <  2:323171/40‑3 (MQ=255)
                                                                                                                gCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCcacaag                                                                                                                                                  >  1:323171/1‑38 (MQ=255)
                                                                                                                 ccAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAcc                                             <  2:576685/140‑1 (MQ=255)
                                                                                                                 ccAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTAcc                                             >  1:576685/1‑140 (MQ=255)
                                                                                                                   aGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGAc                                 >  2:1271255/1‑150 (MQ=255)
                                                                                                                       tGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgt                                                                                                               >  2:242276/1‑68 (MQ=255)
                                                                                                                       tGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgt                                                                                                               <  1:242276/68‑1 (MQ=255)
                                                                                                                           ttcttcGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAg                                                             >  1:697929/1‑114 (MQ=255)
                                                                                                                           ttcttcGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAg                                                             <  2:697929/114‑1 (MQ=255)
                                                                                                                            tcttcGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCa                        <  1:1271255/150‑1 (MQ=255)
                                                                                                                                       gtgCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCt             >  1:292594/3‑150 (MQ=255)
                                                                                                                                        cGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTg            <  2:20365/150‑1 (MQ=255)
                                                                                                                                         gCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAgg                                                   >  2:293351/1‑110 (MQ=255)
                                                                                                                                         gCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAgg                                                   <  1:293351/110‑1 (MQ=255)
                                                                                                                                         gCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTgg           >  2:1384876/1‑150 (MQ=255)
                                                                                                                                           ccGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTc         >  2:1386085/1‑150 (MQ=255)
                                                                                                                                           ccGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTc         <  1:1727933/150‑1 (MQ=255)
                                                                                                                                               tCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGAt     >  1:1039182/1‑150 (MQ=255)
                                                                                                                                                 ccACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTAc                                                                >  2:574352/1‑89 (MQ=255)
                                                                                                                                                 ccACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTAc                                                                <  1:574352/89‑1 (MQ=255)
                                                                                                                                                  cacaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGt          >  2:506957/1‑142 (MQ=255)
                                                                                                                                                  cacaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGt          <  1:506957/142‑1 (MQ=255)
                                                                                                                                                  cacaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgcg  >  2:856343/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
GTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCG  >  NC_002947/380709‑381004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.