New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156311 =	29 (0.410)	17 (0.280)	16/236	3.7	34.2%	intergenic (+8/‑208)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156418 =	40 (0.650)					intergenic (+115/‑101)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
Rejected: Coverage evenness skew score above cutoff.

GCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC  >  NC_002947/1156325‑1156566                                                                                               |                                                                                                                                                     gCTTCTTCGCGGGCGAACCCGCTCCTACAACGACCGAGGCACGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGAcccc                                                                                              >  2:1029648/1‑150 (MQ=255)      ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                                                <  1:229740/127‑1 (MQ=255)      ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                                                <  1:229485/127‑1 (MQ=255)      ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                                                >  2:229740/1‑127 (MQ=255)      ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                                                >  2:229485/1‑127 (MQ=255)      ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTgg                                                                                         >  2:1263456/1‑150 (MQ=255)      ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTgg                                                                                         >  1:1093108/1‑150 (MQ=255)            ggTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGaa                                                                                   <  1:1263456/150‑1 (MQ=255)                 aCCCGCTCCTACAACGACCGAGTCAGGTTTGCATCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                                                <  1:1007974/116‑1 (MQ=255)                 aCCCGCTCCTACAACGACCGAGTCAGGTTTGCATCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                                                >  2:1007974/1‑116 (MQ=255)                   ccGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTcc                                                                                                                     <  1:291159/109‑1 (MQ=255)                   ccGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTcc                                                                                                                     >  2:291159/1‑109 (MQ=255)                   ccGCTCCTACAACGACCGAGTCAGGTCTACGTCGTTGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCaa                                                                            >  1:413863/1‑150 (MQ=255)                     gCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTc                                                                                                                  <  2:627885/110‑1 (MQ=255)                     gCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTc                                                                                                                  >  1:627885/1‑110 (MQ=255)                       tCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGa                                                                        >  1:271120/1‑150 (MQ=255)                                      gTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAg                                                         >  2:1618120/1‑150 (MQ=255)                                       tCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTc                                                                                                                  <  2:1388333/92‑1 (MQ=255)                                       tCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTc                                                                                                                  >  1:1388333/1‑92 (MQ=255)                                          ggTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCaaa                                                                           <  2:671241/128‑1 (MQ=255)                                          ggTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCaaa                                                                           >  1:671241/1‑128 (MQ=255)                                           gTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGc                                                    >  1:1041090/1‑150 (MQ=255)                                           gTTTGCGTCGTAGGAGCGGGTTCACCCGACAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGc                                                    >  1:488991/1‑150 (MQ=255)                                            tttGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTgg                                                     <  1:1254572/148‑1 (MQ=255)                                            tttGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTgg                                                     >  2:1254572/1‑148 (MQ=255)                                              gtcgttgtAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCa                                                 <  1:920699/144‑1 (MQ=255)                                                  ttgtAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAc                                             <  2:452135/148‑1 (MQ=255)                                                        gAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGa                                              >  1:1460921/1‑143 (MQ=255)                                                        gAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGa                                              <  2:1460921/143‑1 (MQ=255)                                                          gCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCa                                     >  1:638287/1‑150 (MQ=255)                                                              gTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCa                                                                             >  2:640731/1‑106 (MQ=255)                                                              gTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCa                                                                             <  1:640731/106‑1 (MQ=255)                                                              gTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACACCCCTCAACCt                                 >  2:396247/1‑150 (MQ=255)                                                                    ccGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCgtcgtc                                                                                                                      >  2:802057/1‑59 (MQ=255)                                                                    ccGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCgtcgtc                                                                                                                      <  1:802057/59‑1 (MQ=255)                                                                    ccGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTa                              <  2:1435083/147‑1 (MQ=255)                                                                    ccGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTa                              >  1:1435083/1‑147 (MQ=255)                                                                    ccGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgt                           >  1:1227945/1‑150 (MQ=255)                                                                    ccGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGGGACAATCCCGTCGTCCTTCCGGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgt                           >  2:713085/1‑150 (MQ=255)                                                                      gcgAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGa                         >  1:754631/1‑150 (MQ=255)                                                                        gaagaaGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAt                             <  1:35091/145‑1 (MQ=255)                                                                        gaagaaGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAt                             >  2:35091/1‑145 (MQ=255)                                                                         aaGAGGCCCGCACAGGCA‑CCCAAAGTGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTCAACa                      >  2:1398871/1‑150 (MQ=255)                                                                            agGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGtt                   <  1:1029648/150‑1 (MQ=255)                                                                            aagCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTGTGTGAACAGtt                   <  1:1184213/148‑1 (MQ=255)                                                                              gCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTgg                 <  2:305922/150‑1 (MQ=255)                                                                                    acaGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCaa                                                          <  1:703725/103‑1 (MQ=255)                                                                                    acaGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCaa                                                          >  2:703725/1‑103 (MQ=255)                                                                                          accccAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAcccccc                                        >  2:1372741/3‑116 (MQ=255)                                                                                          accccAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAcccccc                                        <  1:1372741/114‑1 (MQ=255)                                                                                          a‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACGGTTGGCTCAATGCCCCg     >  1:846314/1‑150 (MQ=255)                                                                                          a‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCg     >  1:1120384/1‑150 (MQ=255)                                                                                              cAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTCTATGTGAACAGTTGGCTCAATGCCCCGGcc  >  2:545675/1‑150 (MQ=255)                                                                                               |                                                                                                                                                     GCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC  >  NC_002947/1156325‑1156566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.