| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,750,060 | Δ1 bp | 5.2% | intergenic (+36/+36) | PP_4203 → / ← mqsA | ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,750,060 | 0 | T | . | 5.2% | 310.0 / 9.7 | 97 | intergenic (+36/+36) | PP_4203/mqsA | ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base T (42/50); new base . (2/3); total (44/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
AACGCGCAGAACTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAACGGGAGAACGCA > NC_002947/4749914‑4750207 | aaCGCGCAGAACTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCCGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTtctc < 1:2114625/150‑1 (MQ=255)aaCGCGCAGAACTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTtctc > 2:2166907/1‑150 (MQ=255)aaCGCGCAGAACTGCGTGCACTGCAAGACCTGCGACATCAAGGAATGGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTtctc < 1:2090658/150‑1 (MQ=255) aCGCGCAGAACTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCa < 2:2262231/150‑1 (MQ=255) gcAGAACTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAg > 1:639212/1‑150 (MQ=255) aaCTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCgg < 2:2383086/150‑1 (MQ=255) cTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCgggg > 1:619831/1‑150 (MQ=255) cTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCC‑GACCAAAATTCATCGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCgggg < 2:663486/150‑1 (MQ=255) tGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCggggg < 1:2029154/150‑1 (MQ=255) tGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCttt > 1:982560/1‑150 (MQ=255) cTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTttgt < 1:479653/150‑1 (MQ=255) tGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTttgtt < 1:1630548/150‑1 (MQ=255) tGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGACCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGCTCATGAGAA‑‑CCGGGGGCTTTttgtt < 1:29668/150‑1 (MQ=38) tGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCGGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGG‑‑CTCATGAGAACCGGGGGCTTTttgtt < 2:1175627/150‑1 (MQ=38) gCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTttgttg < 1:1760857/150‑1 (MQ=255) cAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTgg < 2:555923/150‑1 (MQ=255) gACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTg < 2:1191280/150‑1 (MQ=255) aCCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGc < 1:984793/150‑1 (MQ=255) cTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCa > 1:1931286/1‑150 (MQ=255) tGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCAt < 2:1931286/150‑1 (MQ=255) gCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCAtt < 2:338675/150‑1 (MQ=255) gagaTCAAGGACCCGGCCCAGAACATCC‑CCTGGGTCACTCCTGGGGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTAt < 2:982560/147‑1 (MQ=255) gACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGc < 2:1165840/141‑1 (MQ=255) gACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGc > 1:1165840/1‑141 (MQ=255) aTCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAg < 1:1079207/150‑1 (MQ=255) aaGGACCCGGCCCAGAGCATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCa < 2:1223472/150‑1 (MQ=255) aaGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCa > 1:605320/1‑150 (MQ=255) aaGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCa > 1:2195208/1‑150 (MQ=255) aGGCCCCGCCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAg < 2:1641619/150‑1 (MQ=255) ggACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCa < 2:47496/144‑1 (MQ=255) ggACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCa > 1:47496/1‑144 (MQ=255) aCCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTAc < 1:294717/150‑1 (MQ=255) ccAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTtctc > 1:858970/1‑100 (MQ=255) ccAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTtctc < 2:858970/100‑1 (MQ=255) ccAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTc > 1:1185526/1‑150 (MQ=255) ccAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTc < 2:2422898/150‑1 (MQ=255) ccAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTc > 1:800889/1‑150 (MQ=255) aGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCgg < 1:467344/107‑1 (MQ=255) aGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCgg > 2:467344/1‑107 (MQ=255) gAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTc < 2:639212/150‑1 (MQ=255) cATCA‑CCTGGGTCACCCCTGATGGAGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCAGTATCAGGCAGTACGCACTTCCTCaaa < 2:1207410/150‑1 (MQ=255) cATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCaaa < 2:2195208/150‑1 (MQ=255) cATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCaaa < 1:1050860/150‑1 (MQ=255) tCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAaga < 2:1185526/150‑1 (MQ=255) ccTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGtt < 2:467993/150‑1 (MQ=255) tGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCt < 2:699316/150‑1 (MQ=255) tGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGCTCGCTTCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTGTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCt > 1:1239488/1‑150 (MQ=255) cACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATg < 1:2107915/150‑1 (MQ=255) cccTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAGCAAAAAGCCCCCGGTTCTCATGAG‑‑CCgggg < 2:2415423/90‑1 (MQ=255) cccTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAGCAAAAAGCCCCCGGTTCTCATGAG‑‑CCgggg > 1:2415423/1‑90 (MQ=255) cccTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGGTGGCg > 1:1541585/1‑150 (MQ=255) cccTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCg > 2:546608/1‑150 (MQ=255) cccTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCg > 1:1059106/1‑150 (MQ=255) cccTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAG‑CCCCGGTtctc < 2:1501371/78‑1 (MQ=255) cccTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAG‑CCCCGGTtctc > 1:1501371/1‑78 (MQ=255) ccTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGa > 2:1897581/1‑150 (MQ=255) tGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATc > 2:2065097/1‑150 (MQ=255) gcgcTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCcagca < 1:2065097/150‑1 (MQ=255) cTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCt < 2:356373/150‑1 (MQ=255) tGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCtt > 1:831818/1‑150 (MQ=255) tGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCtt < 2:605320/150‑1 (MQ=255) cGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAGGAGTTCTGGATGGCGATCCCGCCGCTTGAg > 2:786191/1‑150 (MQ=255) gggCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTtctc > 1:938765/1‑63 (MQ=255) gggCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTtctc < 2:938765/63‑1 (MQ=255) gggCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCAc < 2:249999/110‑1 (MQ=255) gggCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCAc > 1:249999/1‑110 (MQ=255) aaCTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGa > 2:2277956/1‑129 (MQ=255) aaCTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGa < 1:2277956/129‑1 (MQ=255) cTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCAc < 1:1678732/150‑1 (MQ=255) cGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACg > 2:2133917/1‑150 (MQ=255) aTGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACt > 2:970355/1‑150 (MQ=255) tGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCcag > 1:1758547/1‑121 (MQ=255) tGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCcag < 2:1758547/121‑1 (MQ=255) gTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATgg < 1:1262530/112‑1 (MQ=255) gTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTgg > 1:742704/1‑150 (MQ=255) gTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCGTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAATAGTTCTGGATgg > 2:1262530/1‑112 (MQ=255) ccTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAg > 1:83729/1‑121 (MQ=255) ccTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAg < 2:83729/121‑1 (MQ=255) ccTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGggtgg > 1:502855/1‑150 (MQ=255) cTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCGGCTTGAGCAGTTTCACCAACGCCACTGGCGGggtggt > 2:1493846/1‑150 (MQ=255) cccTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCtt > 1:371905/1‑150 (MQ=255) cTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATgg < 2:2347456/98‑1 (MQ=255) cTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATgg > 1:2347456/1‑98 (MQ=255) cTTGCGGCAACAAAAAGCAACCGGGTGTGGTGTG‑‑CCGGGGGGTGTTTGGTGGAAACCAGTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGc > 1:1872716/1‑150 (MQ=255) gCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGtttt < 2:433830/150‑1 (MQ=255) ccaacaaAAAGCCCCCGG‑‑CTCATGAGAACCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGtt > 2:419706/2‑84 (MQ=18) ccaacaaAAAGCCCCCGG‑‑CTCATGAGAACCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGtt < 1:419706/83‑1 (MQ=18) acaaAAAGCCCCCGG‑‑CTCATGAGAACCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTc < 2:1422886/148‑1 (MQ=38) acaaAAAGCCCCCGG‑‑CTCATGAGAACCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTc > 1:1422886/1‑148 (MQ=38) caaAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGTTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATa > 1:2194441/1‑150 (MQ=255) aaaaaGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGggtg < 1:184405/132‑1 (MQ=255) aaaaaGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGggtg > 2:184405/1‑132 (MQ=255) aaaaGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAAc < 2:800889/150‑1 (MQ=255) aaaGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAACg > 2:709875/1‑150 (MQ=255) cccccGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAACGGgag > 1:1907591/1‑150 (MQ=255) cccGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAACgg < 1:983523/145‑1 (MQ=255) cccGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAACGGGAGaa > 1:1822364/1‑150 (MQ=255) ccGNTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTCGCCGTTTTCATAACGGGAGAAc > 2:1504054/1‑150 (MQ=255) ccGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAACGGGAGAAc < 2:831818/150‑1 (MQ=255) gTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAACGGGAGAACGCa < 2:619831/150‑1 (MQ=255) | AACGCGCAGAACTGCGTGCACTGCAAGACCTGCGACATCAAGGACCCGGCCCAGAACATCA‑CCTGGGTCACCCCTGAAGGCGCTGGCGGGCCGAACTATCCGAACATGTAAGGCCCCTGCCCTTGCGGCAACAAAAAGCCCCCGGTTCTCATGAG‑‑CCGGGGGCTTTTTGTTGGCTGCCATTATCAGGCAGTACGCACTTCCTCAAAGAGTTCTGGATGGCGATCCAGCAGCTTGAGCAGTTTCACCAACGCCACTGGCGGGGTGGTCTTGCCGTTTTCATAACGGGAGAACGCA > NC_002947/4749914‑4750207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |