Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,451,673 Δ1 bp 5.5% coding (156/1518 nt) lnt → apolipoprotein N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,451,6730C. 5.5% 397.1 / 16.0 128coding (156/1518 nt)lntapolipoprotein N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base C (63/57);  new base . (4/3);  total (67/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01

Only 100 of 136 total aligned reads displayed.

GATCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTGGCCTGGT  >  NC_002947/5451526‑5451821
                                                                                                                                                    |                                                                                                                                                    
gATCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCa                                                                                                                                                    <  2:2024724/150‑1 (MQ=255)
gATCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCATGGCCTGGCGCGGGCTGAGCTCgcgca                                                                                                                                                     <  1:103020/150‑2 (MQ=255)
gATCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCATGGCCTGGCGCGGGCTGAGCTCgcgca                                                                                                                                                     >  2:103020/1‑149 (MQ=255)
 aTCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAg                                                                                                                                                   >  1:1682006/1‑150 (MQ=255)
  tCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAgg                                                                                                                                                  >  1:319484/1‑150 (MQ=255)
  tCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCATGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGGCGCGGGCTGAGCTCgcgcagg                                                                                                                                                   <  1:937735/150‑4 (MQ=255)
   cACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGc                                                                                                                                                 <  2:1666811/150‑1 (MQ=255)
      ccGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGTCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCAt                                                                                                                                              >  1:748103/1‑150 (MQ=255)
      ccGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCAt                                                                                                                                              <  2:1941508/150‑1 (MQ=255)
         ccccGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCAngtg                                                                                                                                           <  2:1511849/150‑1 (MQ=255)
             ggCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcgt                                                                                                                                       <  1:797750/150‑1 (MQ=255)
                     cGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtggtg                                                                                                                               <  1:2329022/150‑1 (MQ=255)
                     cGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtg                                                                                                                                  <  2:2172618/147‑1 (MQ=255)
                     cGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtg                                                                                                                                  >  1:2172618/1‑147 (MQ=255)
                         aaCCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGTCCATGTGGCGTGGCTGGTggttt                                                                                                                           <  2:1189286/150‑1 (MQ=255)
                            ctgctgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttggg                                                                                                                        <  2:1682006/150‑1 (MQ=255)
                             tgctgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggt                                                                                                                       >  2:1858333/1‑150 (MQ=255)
                             tgctgGCCCTGGCGGCCGGTGCTTCCACCCTCATGACCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggt                                                                                                                       >  1:2410232/1‑150 (MQ=255)
                               ctgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggttt                                                                                                                     <  2:1310887/150‑1 (MQ=255)
                               ctgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGACCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggttt                                                                                                                     <  2:1655962/150‑1 (MQ=255)
                                tgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttgggtttg                                                                                                                    <  1:1680911/150‑1 (MQ=255)
                                tgGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggtttg                                                                                                                          <  2:1915893/144‑1 (MQ=255)
                                  gCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGc                                                                                                                  >  2:1549944/1‑150 (MQ=255)
                                   cccTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCCATACCTTGCCCTACCCACATGCAGTCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGcc                                                                                                                 >  1:1743353/1‑150 (MQ=255)
                                    ccTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCt                                                                                                                >  2:1344790/1‑150 (MQ=255)
                                    ccTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCt                                                                                                                <  2:281882/150‑1 (MQ=255)
                                        gcggcCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTAt                                                                                                            <  1:953770/150‑1 (MQ=255)
                                          ggcCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTTTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCATGCCATGTGGCGTGGGTGGTGGTTTGGGGTTGGCCTGTATgg                                                                                                          >  2:156914/1‑150 (MQ=255)
                                          ggcCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGGCGCGGGCTGAGCTCgcgcagg                                                                                                                                                   >  2:2348292/1‑107 (MQ=38)
                                          ggcCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGGCGCGGGCTGAGCTCgcgcagg                                                                                                                                                   <  1:2348292/110‑4 (MQ=38)
                                             cGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGgcgc                                                                                                       <  1:1858333/150‑1 (MQ=255)
                                              ggTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGgc                                                                                                         <  1:1888275/147‑1 (MQ=255)
                                              ggTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGgc                                                                                                         >  2:1888275/1‑147 (MQ=255)
                                               gTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCg                                                                                                     >  1:307353/1‑150 (MQ=255)
                                               gTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCg                                                                                                     >  2:2383342/1‑150 (MQ=255)
                                                  cTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcg                                                                                                                                        <  2:1638704/112‑1 (MQ=255)
                                                  cTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtggcg                                                                                                                                        >  1:1638704/1‑112 (MQ=255)
                                                   ttCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCAc                                                                                                 >  1:1900376/1‑150 (MQ=255)
                                                   ttCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCAc                                                                                                 >  1:1496251/1‑150 (MQ=255)
                                                      gaacgttctggccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTAGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCGTGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGCATGGCGCCAGCACCtg                                                                                              >  2:1225055/8‑150 (MQ=255)
                                                       aCCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtgg                                                                                             >  1:378979/1‑150 (MQ=255)
                                                         cctcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtggtg                                                                                           <  1:1018640/150‑1 (MQ=255)
                                                         cctcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtggtg                                                                                           <  2:735155/150‑1 (MQ=255)
                                                         cctcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTCGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGCGCTCCGCCCGCGCCAGTCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCCGTATGGCGCCGGCCCCtggtg                                                                                           >  1:914420/1‑150 (MQ=255)
                                                          ctcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtggtgg                                                                                          <  2:1089429/150‑1 (MQ=255)
                                                           tcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGa                                                                                         >  2:755138/1‑150 (MQ=255)
                                                           tcctGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGa                                                                                         <  1:755138/150‑1 (MQ=255)
                                                            cctggccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGAt                                                                                        <  1:1344790/150‑1 (MQ=255)
                                                             ctggccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGc                                                                                                                  >  2:893458/1‑123 (MQ=255)
                                                             ctggccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGc                                                                                                                  <  1:893458/123‑1 (MQ=255)
                                                                gccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGCTCTAc                                                                                    <  2:2311756/150‑1 (MQ=255)
                                                                gccctcgcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTAc                                                                                    <  2:1954527/150‑1 (MQ=255)
                                                                 ccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtgg                                                                                                                                          >  2:696515/1‑95 (MQ=255)
                                                                 ccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATgtgg                                                                                                                                          <  1:696515/95‑1 (MQ=255)
                                                                 ccctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACg                                                                                   <  2:748103/150‑1 (MQ=255)
                                                                   ctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAgg                                                                                                                                                  <  2:1464781/85‑1 (MQ=255)
                                                                   ctggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAgg                                                                                                                                                  >  1:1464781/1‑85 (MQ=255)
                                                                    tggcGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCa                                                                                <  2:156097/150‑1 (MQ=255)
                                                                        gcCGTTCGACATCTGCCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTAGCGTGGCTGGTGGTCTGGGTGTGGCCGGTATGGCGCCGGCACCTGGTTGATCTACGTCAGCAt                                                                            >  2:1032079/1‑150 (MQ=255)
                                                                           gTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGaa                                                                         <  2:319484/150‑1 (MQ=255)
                                                                                  aTCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTAc                                                                  <  2:920880/150‑1 (MQ=255)
                                                                                  aTCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTAc                                                                  <  1:193732/150‑1 (MQ=255)
                                                                                  aTCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTAc                                                                  <  1:950174/150‑1 (MQ=255)
                                                                                   tCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTAcg                                                                 >  2:689955/1‑150 (MQ=255)
                                                                                    cTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTAcgg                                                                >  1:1286190/1‑150 (MQ=255)
                                                                                     tGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCATGGCCTGGCGCGGGCTGAGCTCGCGCAGGCCaagg                                                                                                                                            >  1:1963300/1‑70 (MQ=9)
                                                                                              gCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTggttt                                                                                                                           >  1:1276262/1‑81 (MQ=255)
                                                                                                ggTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTcgcc                                                    >  2:766719/1‑150 (MQ=255)
                                                                                                   gttgtCTAGCTCGTTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCgct                                                 <  2:1995929/150‑1 (MQ=255)
                                                                                                          aTCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtg                                                                                                                                  >  1:1986171/1‑62 (MQ=255)
                                                                                                          aTCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCtg                                                                                                                                  <  2:1986171/62‑1 (MQ=255)
                                                                                                          aTCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCtgg                                                                                             >  1:1834580/1‑99 (MQ=255)
                                                                                                           tCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCg                                                                                                     <  1:1056561/90‑1 (MQ=255)
                                                                                                           tCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATc                                                                                       <  2:2092335/104‑1 (MQ=255)
                                                                                                           tCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCaa                                         >  2:127665/1‑150 (MQ=255)
                                                                                                                 tGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCgtgt                                   <  2:378979/150‑1 (MQ=255)
                                                                                                                 tGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCgtgt                                   <  2:621439/150‑1 (MQ=255)
                                                                                                                  gCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGtt                                  <  1:204015/150‑1 (MQ=255)
                                                                                                                  gCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGtt                                  <  1:203847/150‑1 (MQ=255)
                                                                                                                  gCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGtt                                  <  1:1913028/150‑1 (MQ=255)
                                                                                                                   ctctACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTtg                                 >  2:68024/1‑150 (MQ=255)
                                                                                                                   ctctACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTtg                                 >  1:2227705/1‑150 (MQ=255)
                                                                                                                   ctctACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGCGGGTTGGGTGGGTCCGGTATGGCGCCGGCACCGCGTGGATCTGCGGCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTtg                                 >  2:2102797/1‑150 (MQ=255)
                                                                                                                       cacatGGCCTGGCGCGGGCTGAGCTCGCGCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAAt                                        >  1:16450/5‑139 (MQ=38)
                                                                                                                       cacatGGCCTGGCGCGGGCTGAGCTCGCGCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAAt                                        <  2:16450/135‑1 (MQ=38)
                                                                                                                         cTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGctgctg                           >  1:528305/1‑150 (MQ=255)
                                                                                                                          ttGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTgg                          >  2:1585929/1‑150 (MQ=255)
                                                                                                                               ctggcgcGGGCTGAGCTCGCGCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTGTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGGACACCTACGGCGGCGCCCCGCCTCTGCTGGCAATCGTGTTGCTGCTGGCGttc                     >  2:832540/4‑150 (MQ=255)
                                                                                                                               cTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCt                                                                                               <  2:43034/76‑1 (MQ=255)
                                                                                                                               cTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCt                                                                                               >  1:43034/1‑76 (MQ=255)
                                                                                                                                  gcgcGGGCTGAGCTCGCGCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGttcttc                  <  2:2254037/150‑1 (MQ=255)
                                                                                                                                   cgcgGGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCCTGAACCCCTACGGCGGCTTCTCGCCGCGTTTGTCAATCGTGTTGCTGCTGGCGttcttc                  <  2:869163/150‑1 (MQ=255)
                                                                                                                                         cTCAGCCCGCGGCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTCCAACAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCa            <  1:766719/150‑1 (MQ=255)
                                                                                                                                          tCAGCCCGCGCCAGGCAATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCAc           >  1:919430/1‑150 (MQ=255)
                                                                                                                                            aGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTg         >  1:1394975/1‑150 (MQ=255)
                                                                                                                                              cccGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCgctgc                                               >  2:1871445/1‑110 (MQ=255)
                                                                                                                                               ccGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTGGcc      >  1:326295/1‑150 (MQ=255)
                                                                                                                                                cgcgCCAGGCCATGTGGCGTGGCTGGGGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTGGccc     >  2:364824/1‑149 (MQ=255)
                                                                                                                                                 gcgcCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTGGCCTg    <  1:2202973/150‑1 (MQ=255)
                                                                                                                                                  cgcCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTGGCCTgg   <  1:1601999/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GATCACCCGCCCCGGCTGGCCCGGTAACCTGCTGGCCCTGGCGGCCGGTGCTTCCACCCTCCTGGCCCTGGCGCCGTTCGACATCTGGCCGTTGGCGGTGTTGTCCATCGCGGTGCTCTACCTTGGCCTGCGCGAGCTCAGCCCGCGCCAGGCCATGTGGCGTGGCTGGTGGTTTGGGTTTGGCCTGTATGGCGCCGGCACCTGGTGGATCTACGTCAGCATGAACACCTACGGCGGCGCCTCGCCGCTGCTGGCAATCGTGTTGCTGCTGGCGTTCTTCGCCGCACTGGCCTGGT  >  NC_002947/5451526‑5451821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: