Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 874,543 Δ1 bp 6.5% coding (119/840 nt) PP_0759 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947874,5430A. 6.5% 316.8 / 16.4 108coding (119/840 nt)PP_0759hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (48/50);  new base . (2/5);  total (52/56)
Fisher's exact test for biased strand distribution p-value = 4.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.94e-01

Only 100 of 110 total aligned reads displayed.

CACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCAGGCCATTGCC  >  NC_002947/874396‑874691
                                                                                                                                                    |                                                                                                                                                    
      cGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCGTTCG‑ACGCCAAc                                                                                                                                              <  1:958096/150‑1 (MQ=255)
       gACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCGTTCG‑ACGCCAACa                                                                                                                                             <  2:1303557/150‑1 (MQ=255)
       gACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TTCGACGCCAACa                                                                                                                                             <  2:8242/150‑1 (MQ=255)
       gACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTACTGTTGGCGTTCG‑ACGCCAACa                                                                                                                                             <  1:2139466/150‑1 (MQ=255)
         cTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGt                                                                                                                                           >  1:483957/1‑150 (MQ=255)
          tctgCCTAGTATACGGCGAATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCAGCCTGCCGGCCGGTTTCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTa                                                                                                                                          <  2:583381/147‑1 (MQ=255)
            ggCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACa                                                                                                                                        <  2:483957/150‑1 (MQ=255)
               cTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGt                                                                                                                                     >  2:1607353/1‑150 (MQ=255)
               cTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGt                                                                                                                                     >  2:384563/1‑150 (MQ=255)
                tAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGtt                                                                                                                                    >  1:1024983/1‑150 (MQ=255)
                tAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGtt                                                                                                                                    <  1:2137106/150‑1 (MQ=255)
                 aGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTc                                                                                                                                   >  2:2047213/1‑150 (MQ=255)
                    aTACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGc                                                                                                                                <  2:1708286/150‑1 (MQ=255)
                         gggcATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGct                                                                                                                           >  2:1052263/3‑150 (MQ=255)
                         gcgcATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGc                                                                                                                                                  >  1:38870/1‑127 (MQ=255)
                         gcgcATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGc                                                                                                                                                  <  2:38870/127‑1 (MQ=255)
                               gtgGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCATCATGCTCTCGAc                                                                                                                     >  1:1294774/1‑150 (MQ=255)
                                  gATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGa                                                                                                                  >  1:1064675/1‑150 (MQ=255)
                                   aTAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGAt                                                                                                                 >  2:2122976/1‑150 (MQ=255)
                                      gggAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAg                                                                                                              <  2:1000447/150‑1 (MQ=255)
                                       ggAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAgg                                                                                                             <  2:178849/150‑1 (MQ=255)
                                       ggAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGAATTCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAgg                                                                                                             <  1:1730937/150‑1 (MQ=255)
                                        gAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGt                                                                                                            <  2:2216314/150‑1 (MQ=255)
                                          gtgtTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGATGGATGAGGTCa                                                                                                          >  1:489181/1‑150 (MQ=255)
                                          gtgtTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCa                                                                                                          >  1:1833994/1‑150 (MQ=255)
                                           tgtTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGa                                                                                                                  <  1:656979/141‑1 (MQ=255)
                                           tgtTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGa                                                                                                                  >  2:656979/1‑141 (MQ=255)
                                            gtTTTCATGCGTAAGTCTTTTCTCGTCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGCGCATGTTCAGCATTCTCTCGACCGATGAGGTCAAc                                                                                                        <  2:1207722/150‑1 (MQ=255)
                                             ttttCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAAcc                                                                                                       >  1:1853490/1‑150 (MQ=255)
                                                   tGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGt                                                                                                 <  1:1415578/150‑1 (MQ=255)
                                                   tGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGt                                                                                                 <  1:384563/150‑1 (MQ=255)
                                                    gCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTa                                                                                                >  2:1948735/1‑150 (MQ=255)
                                                         aGTNTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACCGTACAGGTTCAGCATGCTCTCGCCCGATTAGGTCAACCAGATGTACgcgc                                                                                           >  2:1499818/1‑150 (MQ=255)
                                                                 gTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTTCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGAt                                                                                                   <  1:164269/134‑1 (MQ=255)
                                                                 gTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTTCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGAt                                                                                                   >  2:164269/1‑134 (MQ=255)
                                                                    atcaGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATcag                                                                                >  2:1908981/1‑150 (MQ=255)
                                                                    atcaGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTACTGTTGGCGTTCG‑ACGCCAACa                                                                                                                                             <  2:1641603/89‑1 (MQ=38)
                                                                    atcaGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTACTGTTGGCG‑TTCGACGCCAACa                                                                                                                                             >  1:1641603/1‑89 (MQ=38)
                                                                     tcaGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCa                                                                                                                                  >  2:680706/1‑99 (MQ=255)
                                                                     tcaGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCa                                                                                                                                  <  1:680706/99‑1 (MQ=255)
                                                                      caGCCTGCTGAGTGCTGGCATGCTTCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGCGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCGGATGTTCGCGCAGTCGTATcagca                                                                              <  2:1207935/150‑1 (MQ=255)
                                                                       aGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGTG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATcagcag                                                                             >  2:438721/1‑150 (MQ=255)
                                                                             ctgAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTg                                                                       >  1:719048/1‑150 (MQ=255)
                                                                                   gCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCTGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGaa                                                                 <  1:1976610/150‑1 (MQ=255)
                                                                                   gCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGaa                                                                 <  1:221743/150‑1 (MQ=255)
                                                                                   gCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGaa                                                                 <  1:1948735/150‑1 (MQ=255)
                                                                                    cTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAg                                                                <  2:1907533/150‑1 (MQ=255)
                                                                                     tGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGAt                                                                                                                 >  2:1126689/1‑100 (MQ=255)
                                                                                     tGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGAt                                                                                                                 <  1:1126689/100‑1 (MQ=255)
                                                                                     tGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTAcgc                                                                                             <  2:1017623/120‑1 (MQ=255)
                                                                                     tGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTAcgc                                                                                             <  2:1017489/120‑1 (MQ=255)
                                                                                     tGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTAcgc                                                                                             >  1:1017489/1‑120 (MQ=255)
                                                                                     tGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTAcgc                                                                                             >  1:1017623/1‑120 (MQ=255)
                                                                                     tGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGc                                                               >  2:2390327/1‑150 (MQ=255)
                                                                                     tGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGc                                                               >  2:1121673/1‑150 (MQ=255)
                                                                                       gCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAg                                                                                                              >  2:1490599/1‑101 (MQ=255)
                                                                                       gCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAg                                                                                                              <  1:1490599/101‑1 (MQ=255)
                                                                                          cccTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGa                                                          <  1:895834/149‑1 (MQ=255)
                                                                                            ctgctgGCCGGCTGCCAGGCGGTGAATACCACCAGCGGGCTGGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGc                                                        <  1:124348/150‑1 (MQ=255)
                                                                                             tgctgGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGGGACGCATCGAGCa                                                       >  1:2064262/1‑150 (MQ=255)
                                                                                                tgGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCTGTATCATCTCGACCGATCAGTTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAgg                                                    <  1:2122976/150‑1 (MQ=255)
                                                                                                tgGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAgg                                                    <  1:503736/150‑1 (MQ=255)
                                                                                                  gCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGgt                                                  <  1:2390327/150‑1 (MQ=255)
                                                                                                  gCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGgt                                                  >  1:974016/1‑150 (MQ=255)
                                                                                                    cGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAAc                                                                                                        <  2:1555059/94‑1 (MQ=255)
                                                                                                    cGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAAc                                                                                                        >  1:1555059/1‑94 (MQ=255)
                                                                                                     ggCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGCTGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGTATCGAGCAAGGGtgtg                                               >  1:706508/1‑150 (MQ=255)
                                                                                                     ggCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGtgtg                                               >  2:387287/1‑150 (MQ=255)
                                                                                                       cTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCt                                             >  2:235179/1‑150 (MQ=255)
                                                                                                        tGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTc                                            <  2:1024983/150‑1 (MQ=255)
                                                                                                          ccAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGa                                          <  1:2103779/150‑1 (MQ=255)
                                                                                                            aGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGa                                          <  1:111535/148‑1 (MQ=255)
                                                                                                            aGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGa                                          >  2:111535/1‑148 (MQ=255)
                                                                                                                 gTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGa                                                                            >  2:1554542/1‑109 (MQ=255)
                                                                                                                 gTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGa                                                                            <  1:1554542/109‑1 (MQ=255)
                                                                                                                    aaTACCACCAGCGGCGGTGCTGTTGGTG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAgc                                <  1:438721/150‑1 (MQ=255)
                                                                                                                     gtcccaccaGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAgcg                               >  2:818302/4‑150 (MQ=255)
                                                                                                                      tACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAgcgc                              >  2:1342704/1‑150 (MQ=255)
                                                                                                                      tACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAgcgc                              <  1:1529398/150‑1 (MQ=255)
                                                                                                                         caccaGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGa                                                          <  1:2087707/119‑1 (MQ=255)
                                                                                                                         caccaGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGa                                                          >  2:2087707/1‑119 (MQ=255)
                                                                                                                         caccaGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGa                           >  2:1741807/1‑150 (MQ=255)
                                                                                                                         caccaGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGa                           >  2:1112687/1‑150 (MQ=255)
                                                                                                                                     tacTGTTGGCGTTCG‑ACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGa                                                                                                    <  1:1000622/63‑1 (MQ=25)
                                                                                                                                     tacTGTTGGCGTTCG‑ACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGa                                                                                                    >  2:1000622/3‑65 (MQ=25)
                                                                                                                                       cTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCgtgt               >  1:1162041/1‑148 (MQ=255)
                                                                                                                                       cTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCgtgt               >  1:1161602/1‑148 (MQ=255)
                                                                                                                                       cTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCgtgt               <  2:1162041/148‑1 (MQ=255)
                                                                                                                                       cTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCgtgt               <  2:1161602/148‑1 (MQ=255)
                                                                                                                                        tGTTGGCGTTCG‑ACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCa            >  1:2159031/1‑150 (MQ=255)
                                                                                                                                         gTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCAg           >  1:1140653/1‑150 (MQ=255)
                                                                                                                                          ttGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGtgtg                                               <  1:1422335/113‑1 (MQ=255)
                                                                                                                                          ttGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGtgtg                                               >  2:1422335/1‑113 (MQ=255)
                                                                                                                                             gCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCAGGCCa       <  1:1607353/150‑1 (MQ=255)
                                                                                                                                              cG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCAGGCCAt      <  1:1499818/150‑1 (MQ=255)
                                                                                                                                                  cGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCAGGCCATTGc   <  1:1113342/150‑1 (MQ=255)
                                                                                                                                                  cGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCAGGCCATTGc   <  1:1112687/150‑1 (MQ=255)
                                                                                                                                                   gAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCAGGCCATTGcc  <  1:1170540/150‑1 (MQ=255)
                                                                                                                                                    aaCGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTgg                                                                      >  2:2279705/1‑81 (MQ=255)
                                                                                                                                                    aaCGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTgg                                                                      <  1:2279705/81‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGCCGGCTGCCAGGCGGTGAATACCACCAGCGGCGGTGCTGTTGGCG‑TCGAACGCCAACAGTACATGTTCAGCATGCTCTCGACCGATGAGGTCAACCAGATGTACGCGCAGTCGTATCAGCAGACCCTGGGTGAAGCATCGAGCAAGGGTGTGCTCGACAAGTCCAGCGCCGATGCCAAGCGTGTGCAGGCCATTGCC  >  NC_002947/874396‑874691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑