| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,993,647 | Δ1 bp | 8.8% | intergenic (+42/+56) | PP_1780 → / ← PP_1781 | mannosyltransferase/acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,993,647 | 0 | A | . | 8.8% | 143.2 / 11.0 | 57 | intergenic (+42/+56) | PP_1780/PP_1781 | mannosyltransferase/acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (21/28); new base . (2/3); total (25/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01 | |||||||||||
ATGCCTTGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGCTTAGCG > NC_002947/1993498‑1993791 | aTGCCTTGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCa > 2:777373/1‑150 (MQ=255) tGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCa > 2:1133807/1‑150 (MQ=255) gCTACATTGGATTGAAAGTGTGGCTGAACTAAAACGGCTGGTGTTGGATGTGACGGCAAATTCTCAGCTGACGCCTATGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACt < 2:294059/150‑1 (MQ=255) aCATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑TCAGCTGCACGGCa < 2:2368448/150‑1 (MQ=255) aTTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGCTGC‑GCCGCACTGCAgg < 2:2445728/150‑1 (MQ=255) ttGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAggg < 1:2435449/150‑1 (MQ=255) tGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATATTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCTATGATTGCGTACGCTTCGCCATCCATGAACCCTTCTTTGCGGC‑GCAGCCGCACTGCAGGGc < 2:520099/150‑1 (MQ=255) gAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGCTGC‑GCCGCACTGCAgggttc < 1:1017957/150‑4 (MQ=255) tGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTg > 1:1450446/1‑150 (MQ=255) aaaGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGcc > 1:1610030/1‑150 (MQ=255) aaCTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTa > 2:1000532/1‑150 (MQ=255) aaCTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTa > 1:1709578/1‑150 (MQ=255) caaaaaCGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATg > 1:1264774/3‑150 (MQ=255) tAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGa < 2:934842/150‑1 (MQ=255) aaCGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGc < 2:1610030/150‑1 (MQ=255) gCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACg > 1:1573784/1‑150 (MQ=255) cTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCa < 1:1133807/150‑1 (MQ=255) cTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCa < 2:782456/150‑1 (MQ=255) tGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAg < 1:641764/150‑1 (MQ=255) gATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTGTTGCCATATGACTTGTATGCGGCACGCAATAACcgcg > 2:169874/1‑150 (MQ=255) aTGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc < 1:718508/150‑1 (MQ=255) aTGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc < 2:1573784/150‑1 (MQ=255) aaaaTACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGc < 2:2250230/150‑1 (MQ=255) tCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACtt > 1:1411315/1‑110 (MQ=255) tCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACtt < 2:1411315/110‑1 (MQ=255) tCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGc > 2:1649802/1‑150 (MQ=255) tGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGc < 1:1649802/150‑1 (MQ=255) gAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGCTGC‑GCCGCACTGCa > 1:1060453/1‑84 (MQ=38) gAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGCTGC‑GCCGCACTGCa < 2:1060453/84‑1 (MQ=38) aagaaTAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCt < 2:2288617/146‑1 (MQ=255) gcCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACtt > 2:1213143/1‑92 (MQ=255) gcCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACtt < 1:1213143/92‑1 (MQ=255) gcCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTgg < 2:1264774/150‑1 (MQ=255) tCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGa > 1:2279499/1‑150 (MQ=255) tCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GAAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGa > 2:584184/1‑150 (MQ=255) gcgcACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGc < 1:1850482/150‑1 (MQ=255) gcgcACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGc > 2:1850482/1‑150 (MQ=255) aCTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTg > 2:1780196/1‑150 (MQ=255) gATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGc < 2:66842/54‑1 (MQ=255) gATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGc > 1:66842/1‑54 (MQ=255) tACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGAGATTATCCGTCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGt < 2:2039396/150‑1 (MQ=255) aCGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGtt < 1:1560450/150‑1 (MQ=255) ttGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAg > 2:574103/1‑44 (MQ=255) ttGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAg < 1:574103/44‑1 (MQ=255) ttGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTccag < 1:777373/150‑1 (MQ=255) gCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTccagcca < 2:1450446/150‑1 (MQ=255) catccatGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCcagccagc > 1:365809/1‑150 (MQ=255) catGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTg < 2:1709578/150‑1 (MQ=255) atGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTgg < 2:653573/150‑1 (MQ=255) cTGCAGTGCGGC‑TGCGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTgg < 2:1804656/143‑1 (MQ=255) cTGCAGTGCGGC‑TGCGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTgg > 1:1804656/1‑143 (MQ=255) tGCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAg > 2:2284754/1‑150 (MQ=255) tGCAGTGCGGC‑TGCGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGCCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAg > 2:2297953/1‑150 (MQ=255) tGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAg > 2:2107344/1‑150 (MQ=255) tGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAg > 2:1919589/1‑150 (MQ=255) tGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAg > 1:1977392/1‑150 (MQ=255) gCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAgg < 1:1000532/150‑1 (MQ=255) ggc‑gCAGCCGCACTGCAGGGCTTTTGCCATATGGCTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGTTAGCTTTTGTCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGCTTAGCg < 1:1617850/150‑1 (MQ=255) | ATGCCTTGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGCTTAGCG > NC_002947/1993498‑1993791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |