| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,500,681 | Δ1 bp | 6.2% | coding (831/891 nt) | PP_2194 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,500,681 | 0 | T | . | 6.2% | 301.5 / 13.2 | 97 | coding (831/891 nt) | PP_2194 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (44/47); new base . (2/4); total (46/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.18e-01 | |||||||||||
CGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCACGCT > NC_002947/2500532‑2500827 | cgTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGTTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCtgt < 1:994382‑M2/148‑1 (MQ=255) tATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGc > 1:2269615/1‑150 (MQ=255) tATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGc > 1:802696/1‑150 (MQ=255) tATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTg > 2:1837736/1‑150 (MQ=255) aCTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGTCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg < 1:1476011/150‑1 (MQ=255) aCTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg < 2:346259/150‑1 (MQ=255) tACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGc < 2:432945/150‑1 (MQ=255) ccAGGGGCGTGGGCGGACCTATACGCTGAGCTCGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCACATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGcaca > 2:1444224/1‑147 (MQ=255) gggCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGt < 2:676667/150‑1 (MQ=255) gggCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggg < 2:240065/150‑2 (MQ=255) gggCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggg < 1:259428/150‑2 (MQ=255) cGTGGGCGGACCTATACGCTGAGCTCGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCACATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggggtt < 1:1444224/150‑5 (MQ=255) gTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg > 1:1294069/1‑138 (MQ=255) gTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg < 2:1294069/138‑1 (MQ=255) ataCGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCATGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATAAATGGGATGTCTCTCTAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCaaaa > 1:2380705/1‑150 (MQ=255) taCGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAAt > 1:1792305/1‑150 (MQ=255) tGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggg > 1:1404014/1‑127 (MQ=255) tGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggg < 2:1404014/128‑2 (MQ=255) gAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCt > 1:654397/1‑150 (MQ=255) aGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTc < 2:100212/150‑1 (MQ=255) gCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCa < 1:1837736/150‑1 (MQ=255) cTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAg < 1:1117956/150‑1 (MQ=255) tGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAgg > 1:667118/1‑150 (MQ=255) tGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAgg > 2:1064758/1‑150 (MQ=255) ggAGCATGGCTTACTGATTGTGGTGGCCTGAAAAAGCCGGTTCAGACAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAggg > 1:2410752/1‑150 (MQ=255) cATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCa > 1:808256/1‑150 (MQ=255) tGGCTTACTGATTGTGGTGGCCTTAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAgc > 2:903885/1‑150 (MQ=255) gCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAgcgc > 2:1651494/1‑150 (MQ=255) cTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGcc > 2:887350/1‑150 (MQ=255) ttACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg < 1:274794/110‑1 (MQ=255) ttACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg > 2:274794/1‑110 (MQ=255) ttACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGccc > 1:2006831/1‑150 (MQ=255) aCTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCAt > 1:2080756/1‑150 (MQ=255) tGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa > 1:2336055/1‑150 (MQ=255) tGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa < 1:856251/150‑1 (MQ=255) tGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa < 1:856088/150‑1 (MQ=255) tGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa > 1:930208/1‑150 (MQ=255) tGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa < 1:1583519/150‑1 (MQ=255) aTTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg > 1:1635545/1‑104 (MQ=255) aTTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg < 2:1635545/104‑1 (MQ=255) gtggtgGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGcc < 1:1824677/150‑1 (MQ=255) tggtggCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGccc > 1:1478220/1‑150 (MQ=255) tggCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACCTGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGAACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTc > 1:426092/1‑150 (MQ=255) tgCCTGAACAGGCCCGTTCAGGCAAACGCCGCCAGAAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCAGTGCCGGGC‑CAGGGAGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCg > 1:188362/2‑150 (MQ=255) gCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCgg < 2:1468566/150‑1 (MQ=255) gatctgtccTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTc < 2:426092/143‑1 (MQ=255) gggCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAg < 2:808256/150‑1 (MQ=255) gggCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAg > 1:1339183/1‑150 (MQ=255) gCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGcc > 1:352080/1‑134 (MQ=255) gCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGcc < 2:352080/134‑1 (MQ=255) cTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCt < 1:887350/150‑1 (MQ=255) ttCAGGCAAACGCCGCCAGCAAATCCTGCCCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCtgtg < 2:2133113/150‑1 (MQ=255) tCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGc > 2:330068/1‑150 (MQ=255) cAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGca < 2:1616992/150‑1 (MQ=255) aGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGcac > 1:576841/1‑150 (MQ=255) gCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGAGCACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACaa > 1:2386392/1‑150 (MQ=255) aaaCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCTGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatg < 1:1594663/150‑1 (MQ=255) aaaCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAgcgc < 1:1293634/111‑1 (MQ=255) aaaCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAgcgc > 2:1293634/1‑111 (MQ=255) aaaCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatg < 2:2286595/150‑1 (MQ=255) aCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCtgt > 1:825742/1‑140 (MQ=255) aCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCtgt < 2:825742/140‑1 (MQ=255) aCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggc > 1:1624542/1‑150 (MQ=255) cgccgcCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggca < 2:2080756/150‑1 (MQ=255) cgccgcCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggca < 2:1675807/150‑1 (MQ=255) cgccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggca < 1:1383576/147‑1 (MQ=255) cgccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggca > 2:1383576/1‑147 (MQ=255) gccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggcatggc < 2:2269615/150‑1 (MQ=255) gccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggcatggc > 1:549412/1‑150 (MQ=255) ccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggca > 1:303385/1‑145 (MQ=255) ccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggca < 2:303385/145‑1 (MQ=255) cAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGt > 1:2214752/1‑53 (MQ=255) cAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGt < 2:2214752/53‑1 (MQ=255) cAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCACGATCCAGCCCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCaa < 2:1391739/150‑1 (MQ=255) cAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatgg > 2:923756/1‑142 (MQ=255) cAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatgg < 1:923756/142‑1 (MQ=255) ccTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCaa < 2:2336055/150‑1 (MQ=255) cTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAat > 2:1712349/1‑150 (MQ=255) tGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGGCCCTCGGCCTCCCAGGGCTGTGCACAATGGCATGGCAAGTAGCCAata > 1:1114356/1‑150 (MQ=255) tGCGCAAATACATGGCCCGCCTCGCCAACCCCCTGTGCCCTGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAata > 2:1166226/1‑150 (MQ=255) gcgcAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACaa > 2:1766906/1‑128 (MQ=255) gcgcAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACaa < 1:1766906/128‑1 (MQ=255) gcgcAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAatat < 1:1712349/150‑1 (MQ=255) cAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATAtgct < 1:1651494/150‑1 (MQ=255) cAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATAtgct < 1:330068/150‑1 (MQ=255) aaaTACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCAt < 2:725444/91‑1 (MQ=255) aaaTACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCAt > 1:725444/1‑91 (MQ=255) aaaTACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa > 2:1400278/1‑93 (MQ=255) aaaTACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa < 1:1400278/93‑1 (MQ=255) aaaTACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATAtgctg < 1:903885/150‑1 (MQ=255) aTACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGcc < 2:2380705/150‑1 (MQ=255) gCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCcagacaga > 2:1890309/1‑150 (MQ=255) tCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCATGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAAc < 2:375547/150‑1 (MQ=255) tCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAAc < 1:1064758/150‑1 (MQ=255) tCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAAc < 2:654397/150‑1 (MQ=255) ccGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCCAAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAAc < 1:258416/149‑1 (MQ=255) ccccTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCGCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCAc < 2:1792305/150‑1 (MQ=255) cTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCACGCt > 1:1088467/1‑150 (MQ=255) | CGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCACGCT > NC_002947/2500532‑2500827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |