Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,778,773 Δ1 bp 5.7% coding (628/924 nt) PP_2431 ← LysR family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,778,7730C. 5.7% 283.9 / 10.6 88coding (628/924 nt)PP_2431LysR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (45/38);  new base . (2/3);  total (47/41)
Fisher's exact test for biased strand distribution p-value = 6.61e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.21e-01

TTCGGGCAGGACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCAT  >  NC_002947/2778630‑2778921
                                                                                                                                                |                                                                                                                                                    
ttCGGGCAGGACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCg                                                                                                                                                <  1:1300828/150‑1 (MQ=255)
ttCGGGCAGGACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCg                                                                                                                                                >  2:196789/1‑150 (MQ=255)
ttCGGGCAGGACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCg                                                                                                                                                <  2:2121919/150‑1 (MQ=255)
     gCAGGACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCGTGCAGGTGCgtgggc                                                                                                                                           <  2:1386762/150‑6 (MQ=255)
      cAGGACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTAcc                                                                                                                                          <  1:2143199/150‑1 (MQ=255)
      cAGGACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGACACCCTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTACCGAGCGGCCCGCGCACCTGCACGGTGCGGTTAcc                                                                                                                                          <  1:2019084/150‑1 (MQ=255)
         gACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCaa                                                                                                                                       >  2:166526/1‑150 (MQ=255)
         gACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCaa                                                                                                                                       >  1:2248483/1‑150 (MQ=255)
           cGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACt                                                                                                                                     <  1:727617/150‑1 (MQ=255)
            gATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTg                                                                                                                                    >  2:1362792/1‑150 (MQ=255)
              tttCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACCGcc                                                                                                                                  >  1:1372558/1‑150 (MQ=255)
               ttCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCa                                                                                                                                 <  1:360017/150‑1 (MQ=255)
                    gTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTATAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGt                                                                                                                            >  1:1584282/1‑150 (MQ=255)
                     ttCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTc                                                                                                                           <  2:49997/150‑1 (MQ=255)
                     ttCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTc                                                                                                                           >  1:1677054/1‑150 (MQ=255)
                            gCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCg                                                                                                                                                >  2:2203918/1‑122 (MQ=255)
                            gCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCg                                                                                                                                                <  1:2203918/122‑1 (MQ=255)
                            gCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACAcc                                                                                                                    >  2:159743/1‑150 (MQ=255)
                                        gcgcTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGtgctgc                                                                                                        <  1:159743/150‑1 (MQ=255)
                                          gcTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCAt                                                                                                      >  1:1050368/1‑150 (MQ=255)
                                           cTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATg                                                                                                     <  1:2349181/150‑1 (MQ=255)
                                            tGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGt                                                                                                    >  1:2233769/1‑150 (MQ=255)
                                              aCATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTAc                                                                                                  >  1:805567/1‑150 (MQ=255)
                                                aTCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCGTGCAGGTGCgtgg                                                                                                                                             >  1:1494828/1‑102 (MQ=255)
                                                aTCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCGTGCAGGTGCgtgg                                                                                                                                             <  2:1494828/105‑4 (MQ=255)
                                                      ccACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCACACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACa                                                                                          >  2:448371/1‑150 (MQ=255)
                                                      ccACGACGTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCACACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACa                                                                                          <  1:448371/150‑1 (MQ=255)
                                                        aCGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCa                                                                                                                                 <  1:182924/109‑1 (MQ=255)
                                                        aCGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCa                                                                                                                                 >  2:182924/1‑109 (MQ=255)
                                                         cGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGc                                                                                       <  1:1080310/150‑1 (MQ=255)
                                                           aCTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCAt                                                                                     >  2:2054218/1‑150 (MQ=255)
                                                                  gACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGCCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCAtgctgctg                                                                              <  1:1213859/150‑1 (MQ=255)
                                                                   aCGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGGGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCAtgctgctgc                                                                             >  1:2375478/1‑150 (MQ=255)
                                                                   aCGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTAGGCATCGTTACTGACCAGCGGCCCACTCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCAtgctgctgc                                                                             >  2:627549/1‑150 (MQ=255)
                                                                       tACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTAcagca                                                                                              >  2:724355/1‑129 (MQ=255)
                                                                       tACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTAcagca                                                                                              <  1:724355/129‑1 (MQ=255)
                                                                          cTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGt                                                                      >  2:1601674/1‑150 (MQ=255)
                                                                          cTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGt                                                                      >  1:332460/1‑150 (MQ=255)
                                                                          cTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGt                                                                      >  2:640908/1‑150 (MQ=255)
                                                                           ttCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCCCGCACCGTGCAGGTGCgtg                                                                                                                                              >  1:1105788/1‑75 (MQ=255)
                                                                           ttCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAAc                                                                                                                                      >  2:169274/1‑85 (MQ=255)
                                                                           ttCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAAc                                                                                                                                      <  1:169274/85‑1 (MQ=255)
                                                                           gtCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCCCGCACCGTGCAGGTGCgtg                                                                                                                                              <  2:1105788/76‑3 (MQ=255)
                                                                           atCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTc                                                                     >  2:1174706/2‑150 (MQ=255)
                                                                             cccccTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCgg                                                                   <  1:981465/150‑1 (MQ=255)
                                                                              ccccTGGATGGCCCGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCggg                                                                  <  2:846561/150‑1 (MQ=255)
                                                                               cccTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCgggg                                                                 <  2:1584282/150‑1 (MQ=255)
                                                                               cccTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCgggg                                                                 <  1:2087286/150‑1 (MQ=255)
                                                                                         ccAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGt                                                                                                    <  1:326676/105‑1 (MQ=255)
                                                                                         ccAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGt                                                                                                    >  2:326676/1‑105 (MQ=255)
                                                                                           aGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAgcgggcgg                                                     >  1:65704/1‑150 (MQ=255)
                                                                                                  ggATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGc                                              >  1:398781/1‑150 (MQ=255)
                                                                                                   gATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCg                                             >  1:1074510/1‑150 (MQ=255)
                                                                                                    gtgccGTCGGCATCGTCACTGACCAGCGGCCGACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCgg                                            <  2:2154843/146‑1 (MQ=255)
                                                                                                    aTGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCgg                                            <  2:332460/150‑1 (MQ=255)
                                                                                                       aCGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGcc                                         <  2:65704/150‑1 (MQ=255)
                                                                                                         gTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAg                                       >  2:1708065/1‑150 (MQ=255)
                                                                                                          tCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAgg                                      <  1:1708065/150‑1 (MQ=255)
                                                                                                          tCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAgg                                      <  2:2233769/150‑1 (MQ=255)
                                                                                                            ggCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTa                                    >  2:376977/1‑150 (MQ=255)
                                                                                                             gCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAg                                   >  2:115080/1‑150 (MQ=255)
                                                                                                             gCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAg                                   >  1:1832028/1‑150 (MQ=255)
                                                                                                                tCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCg                                <  2:376930/150‑1 (MQ=255)
                                                                                                                tCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCg                                <  2:2248483/150‑1 (MQ=255)
                                                                                                                 cGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTc                                 >  2:1926376/1‑148 (MQ=255)
                                                                                                                 cGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTc                                 <  1:1926376/148‑1 (MQ=255)
                                                                                                                 cGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCgg                               <  1:677091/150‑1 (MQ=255)
                                                                                                                  gTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCggg                              >  1:2249200/1‑150 (MQ=255)
                                                                                                                  gTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGGAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCggg                              >  2:814510/1‑150 (MQ=255)
                                                                                                                      cTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACCGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAg                          <  1:166526/150‑1 (MQ=255)
                                                                                                                       tGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAgg                         >  2:2144076/1‑150 (MQ=255)
                                                                                                                         aCCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCgggg                                                                 <  1:731562/108‑1 (MQ=255)
                                                                                                                         aCCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCgggg                                                                 >  2:731562/1‑108 (MQ=255)
                                                                                                                         aCCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGcc                       <  1:2054218/150‑1 (MQ=255)
                                                                                                                         aCCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGcc                       >  2:598198/1‑150 (MQ=255)
                                                                                                                           cAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGccac                     >  1:1055005/1‑150 (MQ=255)
                                                                                                                            aGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGccacc                    >  1:1455833/1‑150 (MQ=255)
                                                                                                                             gCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGAGAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGccacca                   >  2:1658545/1‑150 (MQ=255)
                                                                                                                             gCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGccacca                   <  1:1362792/150‑1 (MQ=255)
                                                                                                                                gCCCACGCACCTGCACGGTGCTGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCa                >  2:1324573/1‑150 (MQ=255)
                                                                                                                                 cccACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCAc               <  1:115080/150‑1 (MQ=255)
                                                                                                                                    aCGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGATTTCGGCTGCAGCGCGTCGGGGGTTACAGCGCGTGGTTGGCGGTCCAGGTAGTCGGGCGAGGCCACCAGCAcgcg            >  1:1116071/1‑150 (MQ=255)
                                                                                                                                     cGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACgcgg           <  2:432281/150‑1 (MQ=255)
                                                                                                                                          cTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGtt      >  2:998066/1‑150 (MQ=255)
                                                                                                                                            tGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTc     >  1:1768018/1‑150 (MQ=255)
                                                                                                                                              cACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGCCGAGGCCACCAGCACGCGGCGGTTCCa   <  2:874806/150‑1 (MQ=255)
                                                                                                                                               aCGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCAt  >  2:661251/1‑150 (MQ=255)
                                                                                                                                               aCGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCAt  <  1:1294465/150‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
TTCGGGCAGGACGATTTCCAGTTCACCGGCCGCGATGTTGGCGCTGACATCCAGCCACGACTTGTAGACGATACCTTCCCCCTGGATGGCCAGGCGGCGGATGACGTCGGCATCGTCACTGACCAGCGGCCCACGCACCTGCACGGTGCGGTTACCCAACTGCCACTTGTCGTACACCCGGCTGTGCTGCATGTACAGCAGACAGGCATGCTGCTGCAGCGCGTCGGGGGTAAGCGGGCGGCCGTGGCGGGCCAGGTAGTCGGGCGAGGCCACCAGCACGCGGCGGTTCCAT  >  NC_002947/2778630‑2778921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: