Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,188,015:1 | +A | 5.2% | intergenic (+76/‑134) | PP_3683 → / → PP_3684 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,188,015 | 1 | . | A | 5.2% | 475.6 / 17.9 | 116 | intergenic (+76/‑134) | PP_3683/PP_3684 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (58/52); new base A (3/3); total (61/55) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.37e-01 |
Only 100 of 117 total aligned reads displayed.
AGTATCTAGCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGTTTTTC > NC_002947/4187866‑4188162 | aGTATCTAGCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCtt > 1:1520798/1‑150 (MQ=255) cTAGCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTaa < 2:110557/150‑1 (MQ=255) aGCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGc < 2:618486/150‑1 (MQ=255) cGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCgg > 2:1863666/1‑150 (MQ=255) gttggttgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGc > 2:2048588/1‑150 (MQ=255) ttggttgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCGCAGCAATCGGAATTAGCCCACGGCTGGCCTCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCGT‑GCTAAGCGGCt > 1:876429/1‑150 (MQ=255) ttgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGc > 1:2060847/1‑150 (MQ=255) tgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGcc < 2:349674/150‑1 (MQ=255) tgATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGcc < 2:349785/150‑1 (MQ=255) tGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTa > 2:329682/1‑150 (MQ=255) ccTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTTAGC‑AAGCGGCTTgg < 1:1353017/143‑1 (MQ=255) ccTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTTAGC‑AAGCGGCTTgg > 2:1353017/1‑143 (MQ=255) tCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACgg > 2:1098274/1‑150 (MQ=255) tCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGCGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACgg > 2:2277183/1‑150 (MQ=255) tCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCt < 1:2048588/150‑1 (MQ=255) cGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCtt < 1:329682/150‑1 (MQ=255) cGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCtt < 1:1098274/150‑1 (MQ=255) gCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTc < 1:1590397/150‑1 (MQ=255) gCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCACAGCTCTCGGCGGTACCTCAAGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGTGCTTTCATCCTc > 2:1327118/1‑150 (MQ=255) cGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTcgc > 1:1068217/1‑150 (MQ=255) gATCATGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTc > 2:530662/1‑147 (MQ=255) gATCATGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTc < 1:530662/147‑1 (MQ=255) gATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATc > 1:2023301/1‑144 (MQ=255) gATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATc > 1:2023163/1‑144 (MQ=255) gATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATc < 2:2023163/144‑1 (MQ=255) gATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCC‑GCACACGTTTAACCAAGCCGCTT‑GCTAGGCGGCTTGGCCCTAACGGGCTTTCATCCTcgcg > 1:24245/1‑150 (MQ=255) aCGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTc > 2:1156375/1‑150 (MQ=255) gATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGcc > 2:775025/1‑122 (MQ=255) gATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGcc < 1:775025/122‑1 (MQ=255) gATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCg > 2:714057/1‑150 (MQ=255) aTGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCgg < 1:861303/150‑1 (MQ=255) gCCAAGGATGAAGACAAGCCGTCCTAGCAGTCTCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGcc > 2:1973573/1‑150 (MQ=255) ccAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCa > 1:2449378/1‑150 (MQ=255) cAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCaa > 2:230645/1‑150 (MQ=255) cAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCaa > 1:819114/1‑150 (MQ=255) cAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCaa > 2:1441320/1‑150 (MQ=255) gAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTgc < 1:714057/150‑1 (MQ=255) aaGACAAGCCGTCCTAGCAGTCGCTCTCTCAGCTCTCGCCGTGAACACATGGCGCGCCCCTCGCGGTGCCGTCTGGCG‑TCCACCAAACCGCTT‑GCTAAGCGGCTTCGCCCTAACGGGCCTTCATCCTCGCGCCTCCGGCCAAGGCCcgcg > 2:75175/1‑150 (MQ=255) aCAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGGTCCCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCCCCGGCCAAGGCCTgcgcgc > 2:202724/1‑150 (MQ=255) gCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACgg > 2:1927567/1‑109 (MQ=255) gTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCtt > 2:1065182/1‑150 (MQ=255) ccTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGc < 1:600749/150‑1 (MQ=255) tAGCAGTCGCTTACTCAGCTTCCGGCGTTAACCCATCGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCGAACGCCTGCGCGCTCCGCTTGCCa > 2:1207345/1‑150 (MQ=255) aGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCaa > 1:1675022/1‑150 (MQ=255) gCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCaaa > 1:1847779/1‑150 (MQ=255) gCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCaaa > 2:757251/1‑150 (MQ=255) gCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCaaa < 1:1156375/150‑1 (MQ=255) cAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAAt < 2:1795436/150‑1 (MQ=255) aGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATc < 1:1441320/150‑1 (MQ=255) tCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGTTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATaaa > 2:2446228/1‑150 (MQ=255) gCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCACGCTCGGCGCGCTCCGCTTGCCAAATCaaaa < 1:2277183/150‑1 (MQ=255) cTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAg < 2:876429/150‑1 (MQ=255) cTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAg < 1:1172719/150‑1 (MQ=255) cctcAGCTCTCGGTGTTACCCCATGGCACCCCGCTGGCGGTGCCGGCTGGCG‑TGAACCACGCCGCAT‑GCCGTTGGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTc < 1:1002529/149‑1 (MQ=255) aGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCAtct > 1:272736/1‑150 (MQ=255) tctcGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCAAAAACGGGCTTTCATACTAAGACCTCGCTCCAAATGCTGCTCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTa < 1:1863666/150‑1 (MQ=255) tcGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGa > 1:618649/1‑150 (MQ=255) tcGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGa > 1:294665/1‑150 (MQ=255) gCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTc < 1:1450176/117‑1 (MQ=255) gCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTc > 2:1450176/1‑117 (MQ=255) cGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCgg < 1:804923/63‑1 (MQ=255) cGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCgg > 2:804923/1‑63 (MQ=255) gTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCaaaa > 2:1644977/1‑132 (MQ=255) gTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCaaaa < 1:1644977/132‑1 (MQ=255) tACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTcc < 2:1648729/150‑1 (MQ=255) tACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTAGCTTCGCGTGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGGTcc < 2:1520798/150‑1 (MQ=255) ccTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTc > 1:2194665/1‑132 (MQ=255) ccTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTc < 2:2194665/132‑1 (MQ=255) cTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGa < 2:1856837/140‑1 (MQ=255) cTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGa > 1:1856837/1‑140 (MQ=255) cTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAg > 1:2263749/1‑150 (MQ=255) cTCATGGCGCGCCCCTAGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTccccg > 1:791533/1‑148 (MQ=255) gcgcgcCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAAc < 1:1973573/150‑1 (MQ=255) gcgcCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGGGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGc > 1:1790053/1‑121 (MQ=255) cgcCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCg > 1:76537/1‑103 (MQ=255) gcCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACgtgt < 2:819114/150‑1 (MQ=255) cccTGGCGGGGCCGGCTGGCG‑TGAACCAATCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCg > 1:666931/1‑150 (MQ=255) cccTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCg < 2:618649/150‑1 (MQ=255) cccTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCCTTCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCg > 1:743937/1‑150 (MQ=255) ccTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAg > 1:2116570/1‑126 (MQ=255) ccTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAg < 2:2116570/126‑1 (MQ=255) cTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCt > 2:1067506/1‑95 (MQ=255) cTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCt < 1:1067506/95‑1 (MQ=255) cTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCt < 1:230645/150‑1 (MQ=255) gCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTcc < 2:2406073/125‑1 (MQ=255) gCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATc > 1:463046/1‑150 (MQ=255) ggCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAg < 2:463046/150‑1 (MQ=255) tGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCtt < 2:2263749/150‑1 (MQ=255) ccAAGCCGCTTAGC‑AAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAg < 1:2208695/113‑1 (MQ=255) ccAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAg < 1:272199/61‑1 (MQ=255) ccAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAg > 2:272199/1‑61 (MQ=255) ccAAGCCGCTT‑AGCAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAg > 2:2208695/1‑113 (MQ=255) cAAGCCGCTTAGC‑AAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTTCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCt > 1:2316755/1‑150 (MQ=255) cAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCt > 1:1766261/1‑150 (MQ=255) cAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCt > 2:805971/1‑150 (MQ=255) ccGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGttt < 2:2060847/150‑1 (MQ=255) cTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTcc > 2:570468/1‑102 (MQ=255) cTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTcc < 1:570468/102‑1 (MQ=255) cTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGTTTTTc < 2:697361/150‑1 (MQ=255) cTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGTTTTTc < 2:1675022/150‑1 (MQ=255) | AGTATCTAGCGTTGGTTGATGCCTCATCGGTAGCTGCCGATCACGATGCCAAGGATGAAGACAAGCCGTCCTAGCAGTCGCTTTCTCAGCTCTCGGCGTTACCTCATGGCGCGCCCCTGGCGGGGCCGGCTGGCG‑TGAACCAAGCCGCTT‑GCTAAGCGGCTTGGCCCTAACGGGCTTTCATCCTCGCGCCTCCGGCCAAGGCCTGCGCGCTCCGCTTGCCAAATCAAAAGCTCATCTCTAGATAGCTCCCAGTACAACGTGTCGCTTCGCCTCCGATCAAGCCTTGCGCTGTTTTTC > NC_002947/4187866‑4188162 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |