| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 917,640:1 | +C | 5.5% | intergenic (‑71/+128) | PP_0798 ← / ← opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 917,640 | 1 | . | C | 5.5% | 371.1 / 14.6 | 91 | intergenic (‑71/+128) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| Reads supporting (aligned to +/- strand): ref base . (47/39); new base C (3/2); total (50/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.50e-01 | |||||||||||
GGCAAGGCAACTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAA > NC_002947/917492‑917789 | ggcaaggcaaCTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAt‑t > 1:1408325/1‑150 (MQ=255)ggcaaggcaaCTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAACGGGCATTGTCGGACAAGAt‑t > 2:1132189/1‑150 (MQ=255)ggcaaggcaaCTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCACGGCCATTCGCGGCGGCGGTATTCTATTGAAGCGGGCAGTGTCGGACAAGAt‑t > 2:261853/1‑150 (MQ=255) aggcaaCTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTc > 1:2142778/1‑150 (MQ=255) aggcaaCTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTc < 1:1130050/150‑1 (MQ=255) aggcaaCTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTc < 1:541025/150‑1 (MQ=255) gcaaCTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCg > 2:913757/1‑150 (MQ=255) gCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGaa < 2:1408325/150‑1 (MQ=255) ccAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGAATGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGTGATATTCTAGGGAAGCGGGCATTGTCGGACGAGAT‑TTGTCCGACGGAAGc > 1:500396/1‑150 (MQ=255) cAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCa > 1:161839/1‑150 (MQ=255) cAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGCCGGACAA‑ATCTTGTCCGAcaatgccc < 1:2434990/150‑8 (MQ=255) aGGTTGAGGGTCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGAGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTCTCGGACAAGAT‑TTGTCCGACGGAAGCAc < 1:1837664/150‑1 (MQ=255) gTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACgg > 2:600437/1‑150 (MQ=255) ggATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATCGGGGACCCTTGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAc > 1:1023383/1‑150 (MQ=255) ggANCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAc > 2:1502085/1‑150 (MQ=255) tCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGt > 1:1185916/1‑150 (MQ=255) cAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTa < 1:1502085/150‑1 (MQ=255) gCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACt > 2:1160390/1‑150 (MQ=255) gCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACt > 2:853056/1‑150 (MQ=255) cTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGTCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACtt > 1:145135/1‑150 (MQ=255) ggTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGa < 2:1691083/150‑1 (MQ=255) gCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGAttt > 2:1072719/1‑150 (MQ=255) cGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAt‑tt > 2:1277398/1‑112 (MQ=255) cGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAt‑tt < 1:1277398/112‑1 (MQ=255) gACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGc < 2:1436413/150‑1 (MQ=255) aCCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATCGTCGGACAA‑ATCTTGTCCGAcaatg > 2:2055158/1‑117 (MQ=255) aCCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATCGTCGGACAA‑ATCTTGTCCGAcaatg < 1:2055158/121‑5 (MQ=255) cTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGt > 2:312941/1‑150 (MQ=255) gTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCGGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTgg > 2:1482462/1‑150 (MQ=255) gTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTgg > 2:1480962/1‑150 (MQ=255) gTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTgg < 1:1748315/150‑1 (MQ=255) tAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATAGACCGTGGa > 1:1921774/1‑150 (MQ=255) gACTGCGAGACGCTGGGATTGGGAGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAACCACGGTGAAC‑CGGACTCTTCGATTTGCCCTGGccc > 2:1182073/1‑150 (MQ=255) gACTGCGAAACGCGGGGATTGGGTGGGCATTCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGAcc > 2:2250204/1‑150 (MQ=255) gACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGAcc > 2:703510/1‑150 (MQ=255) gCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTg > 2:1603249/1‑150 (MQ=255) cGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGt < 1:1132189/150‑1 (MQ=255) gAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTa < 1:1917553/150‑1 (MQ=255) gAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTa > 2:2107877/1‑150 (MQ=255) gcgGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGc < 1:261853/150‑1 (MQ=255) ggggATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCNATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCgg > 1:2152241/1‑150 (MQ=255) ggggATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCgg < 1:127669/150‑1 (MQ=255) gggATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCggg < 1:882537/150‑1 (MQ=255) gggATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCggg < 1:1050021/150‑1 (MQ=255) ggATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGt < 2:2149934/150‑1 (MQ=255) gATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAt > 2:909402/1‑85 (MQ=255) gATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAt < 1:909402/85‑1 (MQ=255) ttGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGCCGGAAGCACGGTGTAC‑CGTACTTTTCGATCTGCCGTGGACCCTTGTAGGAGCGGGTTTa < 1:937643/150‑1 (MQ=255) tgggCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGTTGGAATTGTCAGACGATAC‑GGGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCcgc < 1:1482462/150‑1 (MQ=255) tgggCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCcgc < 1:703510/150‑1 (MQ=255) gCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGaa > 1:1080514/1‑150 (MQ=255) cTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCg > 1:881008/1‑150 (MQ=255) tCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGACCGGGTTTACCCGCGAACACCgg > 2:1180462/1‑150 (MQ=255) tACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGTACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGaa < 2:184292/150‑1 (MQ=255) tACTGCGCGCGCAGCGCTATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGaa < 2:1023383/150‑1 (MQ=255) aCTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAg > 1:351276/1‑150 (MQ=255) cGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTATGAGCGGGTTTACCCGCGAACACCGGCGAAGCctt < 1:1480962/150‑1 (MQ=255) cGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCctt < 2:2142778/150‑1 (MQ=255) gTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCcttc < 2:1019787/150‑1 (MQ=255) gTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCcttc > 2:650524/1‑150 (MQ=255) gggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCgg < 1:250167/150‑1 (MQ=255) gggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCgg < 1:1160390/150‑1 (MQ=255) gggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCgg < 1:312941/150‑1 (MQ=255) ggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGgt > 2:1581902/1‑71 (MQ=255) ggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGgt < 1:1581902/71‑1 (MQ=255) ggCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCggg > 1:984324/1‑150 (MQ=255) ccATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTa > 2:569672/1‑150 (MQ=255) cATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTaa < 1:853056/150‑1 (MQ=255) cggcggcgATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTc < 2:351276/150‑1 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGc > 1:317010/1‑95 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGc < 2:317010/95‑1 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGcc > 2:688287/1‑123 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGcc < 1:688287/123‑1 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACt > 2:1350397/1‑150 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACt > 2:1834868/1‑150 (MQ=255) gATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTAAACt > 1:703899/1‑150 (MQ=255) ttCTAGGGAAGCGGGCATTGTCGGCCAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTCGGAGCGGGTTTACCCGCGCACACCGGCGACGCCTTCTTCGCGGGTAACCGCTCCTACCCTGgca > 2:934854/1‑150 (MQ=255) ttCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCTAAGGCCAACACGGT‑TACAGGTACTTTTCTGTTTACTGTGGACCCTTGTAAGAGCGGGTGTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGgca > 1:1864029/1‑150 (MQ=255) ttCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCgg < 2:1579437/129‑1 (MQ=255) ttCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCgg > 1:1579437/1‑129 (MQ=255) ttCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGgca > 2:934855/1‑150 (MQ=255) ttCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGACCTGGACGATTGTAGGCGCGTGTTTTTCCGTTAACATCTGCGAGGTCGTCTTCGCGGGTAACCGCTCCTACACTGgca < 2:1464907/150‑1 (MQ=255) ttCTAGGGAAGCGGGCAGTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACGTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCCCGGGTAACCGCTCCTACACTCgca < 2:1176750/150‑1 (MQ=255) gggAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCaaa > 1:777575/1‑150 (MQ=255) gggAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCaaa < 1:1072719/150‑1 (MQ=255) cGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGCAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCGCCTACACTGGCAGCAAAAGATCa < 2:1185916/150‑1 (MQ=255) ttccgTCGGACAA‑ATCTTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAac > 2:845637/5‑150 (MQ=39) cATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAac > 1:314248/1‑150 (MQ=255) ttGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAacac < 2:304936/150‑1 (MQ=255) cgTCGGACAA‑ATCTTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACg > 2:2050096/2‑150 (MQ=255) tCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGtt < 1:1603249/150‑1 (MQ=255) gACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTaca < 1:2341312/121‑1 (MQ=255) gACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTaca > 2:2341312/1‑121 (MQ=255) aaGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCCGCAAAAGATCAGAACACGTTCAGTgg > 1:2098355/1‑150 (MQ=255) gAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGt > 2:633183/1‑150 (MQ=255) gAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGt > 2:1344746/1‑150 (MQ=255) aT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGCAGCGTTCTTCGCTGGTAACGGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTa > 1:281692/1‑150 (MQ=255) aT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGGTTACCCGAGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTAAGTAGGTa > 1:157164/1‑150 (MQ=255) t‑ttGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTaa > 2:795893/1‑150 (MQ=255) | GGCAAGGCAACTGCCCAGGTTGAGGATCAGCTCGGGGTGCGACCTGTAGACTGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGAT‑TTGTCCGACGGAAGCACGGTGTAC‑CGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAACACCGGCGAAGCCTTCTTCGCGGGTAACCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAA > NC_002947/917492‑917789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |