| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,976,027:1 | +G | 6.3% | coding (916/1104 nt) | pheA → | bifunctional chorismate mutase/prephenate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,976,027 | 1 | . | G | 6.3% | 447.9 / 22.7 | 111 | coding (916/1104 nt) | pheA | bifunctional chorismate mutase/prephenate dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (48/56); new base G (4/3); total (52/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.41e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
CCGAGAAGATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTG > NC_002947/1975878‑1976173 | cGAGAAGATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑a > 2:923253/1‑150 (MQ=255) gagaAGATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCt > 1:1989562/1‑148 (MQ=255) gagaAGATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCt < 2:1989562/148‑1 (MQ=255) gagaAGATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑At < 2:787931/150‑1 (MQ=255) gagaAGATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑At < 2:2210440/150‑1 (MQ=255) gaagaTCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCa < 1:798942/150‑1 (MQ=255) cGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACgg > 1:2279919/1‑150 (MQ=255) gAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGc > 2:1112141/1‑150 (MQ=255) aGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCTGAT‑AGAACGGCac < 1:2146634/150‑2 (MQ=255) gACCTCCCGGACAACGCCACGAGCTTCATGCTGATCGGTAACCAGTAATTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATc < 2:1592341/150‑1 (MQ=255) gACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATc < 2:1993549/150‑1 (MQ=255) ccGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGa < 1:656479/150‑1 (MQ=255) cccGGACAGCTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCt < 2:1308726/150‑1 (MQ=255) cccGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCt < 2:569891/150‑1 (MQ=255) cGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGa < 1:29048/150‑1 (MQ=255) aCAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACGGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCt < 1:2289509/145‑1 (MQ=255) aCAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATc > 1:1660836/1‑140 (MQ=255) cTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCAt > 1:2430437/1‑150 (MQ=255) tCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGCCCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATc > 1:1035673/1‑150 (MQ=255) ccACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCg > 2:1575700/1‑150 (MQ=255) cACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCga > 1:1060267/1‑150 (MQ=255) cACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGAACTGACCCGCATCga < 2:2279919/150‑1 (MQ=255) cgcgCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCgaga > 1:1792575/1‑150 (MQ=255) gcgcTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAc < 2:1060267/150‑1 (MQ=255) ttCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAcccgc < 1:1406418/150‑1 (MQ=255) ccTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAcccgccc < 2:1114033/150‑1 (MQ=255) tgatgaTCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGt > 1:2218692/1‑150 (MQ=255) tgatgaTCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGt > 2:931287/1‑150 (MQ=255) gatgatCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTc > 1:199048/1‑150 (MQ=255) tgatCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGATGCCGTTCTGAT‑AGAACGGCacca < 2:1001097/120‑4 (MQ=255) tgatCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTGGCATGAGTTGCTGATGCCGTTCTGAT‑AGAACGGCacca > 1:1001097/1‑117 (MQ=255) tgatCGGTAACAAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTcgc < 1:937198/150‑1 (MQ=255) atCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCgcgc > 1:2142113/1‑150 (MQ=255) cGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAg < 1:923253/150‑1 (MQ=255) ggTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGc < 1:2359363/150‑1 (MQ=255) ggTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGc < 1:2080148/150‑1 (MQ=255) gTAATCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTCCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCg < 2:1192205/150‑1 (MQ=255) ccAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCaa < 1:392372/150‑1 (MQ=255) cAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCTGAT‑AGAACGGCa < 2:757874/106‑1 (MQ=255) cAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCTGAT‑AGAACGGCa > 1:757874/1‑106 (MQ=255) cAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAg > 2:1291572/1‑150 (MQ=255) cAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAg > 2:2280227/1‑150 (MQ=255) ggAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTg < 2:1091658/150‑1 (MQ=255) gTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGAcc < 1:1112141/150‑1 (MQ=255) tACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCAt < 2:490975/115‑1 (MQ=255) tACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCAt > 1:490975/1‑115 (MQ=255) tACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCt > 2:2027822/1‑150 (MQ=255) tACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCt > 2:980075/1‑150 (MQ=255) ccgccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTAc < 1:1193360/150‑1 (MQ=255) gccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTcgc > 2:1811940/1‑128 (MQ=255) gccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTcgc < 1:1811940/128‑1 (MQ=255) gccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACgt < 1:1291572/150‑1 (MQ=255) gccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGATCCTAGCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACgt < 2:1796522/150‑1 (MQ=255) ccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACgtg < 1:1110150/150‑1 (MQ=255) ccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACgtg > 2:767396/1‑150 (MQ=255) cGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAccc > 1:609084/1‑113 (MQ=255) cGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAccc < 2:609084/113‑1 (MQ=255) gCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCa < 2:199048/150‑1 (MQ=255) cgacgaCAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCAt < 1:95761/150‑1 (MQ=255) gacgacAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATc < 1:980075/150‑1 (MQ=255) acgacAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCg > 1:1070387/1‑150 (MQ=255) acAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGa > 2:1498469/1‑129 (MQ=255) acAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGa < 1:1498469/129‑1 (MQ=255) acAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACt > 1:1951722/1‑150 (MQ=255) cTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCgg > 1:1118204/1‑150 (MQ=255) atcGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCcaccac > 2:2330666/1‑150 (MQ=255) tcGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGccacca < 2:2153222/148‑1 (MQ=255) tcGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGccacca > 1:2153222/1‑148 (MQ=255) gTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACcgc > 1:1429517/1‑150 (MQ=255) tttCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTAc < 2:911257/116‑1 (MQ=255) tttCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTAc > 1:911257/1‑116 (MQ=255) tGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGc < 2:1777114/150‑1 (MQ=255) gAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCGACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCt < 2:1035673/150‑1 (MQ=255) gCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGa > 1:1389068/1‑150 (MQ=255) caacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTTAt > 2:307631/1‑150 (MQ=255) caacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGAt < 2:2430437/150‑1 (MQ=255) aacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATc > 1:590001/1‑150 (MQ=255) aacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATc < 2:1747053/150‑1 (MQ=255) aGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAgg < 2:2280822/150‑1 (MQ=255) aGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAgg < 2:308270/150‑1 (MQ=255) gCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGc < 2:2447492/150‑1 (MQ=255) ccAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCg < 1:2330666/150‑1 (MQ=255) cAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCgg < 1:1575700/150‑1 (MQ=255) aGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGt > 1:1595628/1‑150 (MQ=255) ggTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGt < 1:906765/149‑1 (MQ=255) ggTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGt > 2:906765/1‑149 (MQ=255) gTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGa < 2:590001/150‑1 (MQ=255) ttGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAg < 2:1792575/150‑1 (MQ=255) gCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCg > 1:94039/1‑101 (MQ=255) gCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCg < 2:94039/101‑1 (MQ=255) gAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGt > 1:2437913/1‑76 (MQ=255) gAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGt < 2:2437913/76‑1 (MQ=255) gCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCa < 2:1951722/150‑1 (MQ=255) gTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCaggag < 1:753125/150‑1 (MQ=255) atGCCGTTCTGAT‑AGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTAGATTTTCTTCATCGCCTTCGTCGGCCACAAGACTAGCCCGGTGGTCAAGGCGGTGCTCGAGCAGATCAGCCaggag > 1:1116436/2‑150 (MQ=255) gCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGccac > 1:941248/1‑100 (MQ=255) gCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGccac < 2:941248/100‑1 (MQ=255) gTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCACGGCGGGGCTCGAGCAGCTCCGCCACGGGGCggt > 2:822439/1‑150 (MQ=255) ttCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCtgcg > 2:2057064/1‑148 (MQ=255) t‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTtc < 2:698720/84‑1 (MQ=255) | CCGAGAAGATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTG > NC_002947/1975878‑1976173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |