| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,567,128:1 | +C | 6.0% | coding (843/879 nt) | PP_2250 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,567,128 | 1 | . | C | 6.0% | 406.8 / 18.6 | 100 | coding (843/879 nt) | PP_2250 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (49/45); new base C (3/3); total (52/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.79e-01 | |||||||||||
GCGCGCTCATGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGC > NC_002947/2566985‑2567276 | gcgcgcTCATGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCctgc < 1:1385330/150‑1 (MQ=255) tCATGACGCGGTGCGGGGCCTATCGACCGACATGACGGCTAAGAATGTATGATATGTAAGTGCTTAGGTGGAATTCCTACACCCAGGTTGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCATGCA‑GTCTTCTGCAGc > 1:2387503/1‑150 (MQ=255) cATGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGC‑TGCACGCctgctgatcga < 1:2282543/150‑6 (MQ=255) tGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGc < 1:1397311/150‑1 (MQ=255) tGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGc < 2:1087940/150‑1 (MQ=255) ggTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCATCAGGCGTGCA‑GCCTGCTGCAGCGGCtgttgt < 2:272798/150‑1 (MQ=255) gCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTg < 2:1168046/150‑1 (MQ=255) gCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCACCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCca < 2:1283420/150‑1 (MQ=255) tagcGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAg < 1:2062265/147‑1 (MQ=255) tATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAg > 1:2243859/1‑150 (MQ=255) tCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAAAAATGGCGACGGTCGGCACACACGGATCAGCCAGCTGCCCGANCAGCAGNCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGa < 1:2386903/150‑1 (MQ=255) cGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGat < 1:1030559/150‑1 (MQ=255) ccGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCGGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATg > 1:1626259/1‑150 (MQ=255) ccGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGACATg > 1:1545705/1‑150 (MQ=255) cGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGc > 1:1692283/1‑150 (MQ=255) cGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGc > 1:1017801/1‑150 (MQ=255) cGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGc > 2:1751743/1‑150 (MQ=255) gagaTATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCa > 1:2420950/1‑150 (MQ=255) atatCGGCTTGAGGGGTAAAAGCCTGGCCCGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACgg < 1:1818100/150‑1 (MQ=255) cGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAg < 2:1017801/150‑1 (MQ=255) ggCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGCAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGt > 2:348345/1‑150 (MQ=255) ggCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGt > 1:1941974/1‑150 (MQ=255) gcgtGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGtt < 1:898412/147‑1 (MQ=255) gCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGtt < 1:1547297/150‑1 (MQ=255) gAGGGGTAAAAGATTGAAGTGCTTAGGGAACATTCTTACAGACTTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCCATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCaa < 2:1378903/150‑1 (MQ=255) gTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCtgttg < 1:569079/112‑1 (MQ=255) gTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCtgttg > 2:569079/1‑112 (MQ=255) tAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGtt < 2:532909/150‑1 (MQ=255) aaaaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCCACGGTAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTg < 2:1797034/150‑1 (MQ=255) aaaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATAAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGc > 1:897241/1‑150 (MQ=255) gATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCgtg > 2:252613/1‑150 (MQ=255) aGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGACATGCACGGGCAGTTGCAATTCGTTGCGTGTATTAc < 2:1545705/150‑1 (MQ=255) gTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCGGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACg < 2:1626259/150‑1 (MQ=255) tGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACgg > 2:1877534/1‑150 (MQ=255) gCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTgc > 2:556311/1‑102 (MQ=255) gCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTgc < 1:556311/102‑1 (MQ=255) ttAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAAt > 2:1974719/1‑150 (MQ=255) ggAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCa > 1:1366041/1‑150 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCGCATGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAg > 2:1640582/1‑150 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAg < 1:1974719/150‑1 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAg < 2:596849/150‑1 (MQ=255) gAAAATTCTTACAACAGCATAGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAg > 2:2434615/1‑150 (MQ=255) aaaaTTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAgg < 1:1877534/150‑1 (MQ=255) aaaaTTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAgg < 1:252613/150‑1 (MQ=255) tCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCAc < 2:2449495/150‑1 (MQ=255) ttACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGc < 1:633409/123‑1 (MQ=255) ttACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGc > 2:633409/1‑123 (MQ=255) tACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCACGATCAGCAGGAGTGCC‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTCTTACGGAAGTCCCGGCGCGCCAg > 2:271962/1‑150 (MQ=255) aCAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACg > 1:2347273/1‑131 (MQ=255) aCAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACg < 2:2347273/131‑1 (MQ=255) cAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGAc > 1:396289/1‑150 (MQ=255) cAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGAc > 2:764362/1‑150 (MQ=255) aGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCg < 1:644729/71‑1 (MQ=255) aGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCg > 2:644729/1‑71 (MQ=255) aGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGGTGCTGGTATTACGGAATTCCAGGCGCACCAGACg > 2:188828/1‑150 (MQ=255) gacggacgGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCgt < 2:999428/112‑1 (MQ=255) gacggacgGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCgt > 1:999428/1‑112 (MQ=255) ggacggCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGtt > 1:482543/1‑105 (MQ=255) ggacggCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGtt < 2:482543/105‑1 (MQ=255) aGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAAtt > 2:271826/1‑115 (MQ=255) aGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAAtt < 1:271826/115‑1 (MQ=255) gTCACGGATCGGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg < 1:1922400/150‑1 (MQ=255) gTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg < 1:1095586/150‑1 (MQ=255) tCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCTGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGc > 2:1533789/1‑150 (MQ=255) tCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGc < 1:481967/150‑1 (MQ=255) tCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGc > 2:1561511/1‑150 (MQ=255) aCGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAGTTCCCGGCACACTAAACTCACGCGGGCCAGCAGCGGGGCGa > 1:2369542/1‑150 (MQ=255) aCGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGa < 2:2420950/150‑1 (MQ=255) ggATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCggg < 2:929482/144‑1 (MQ=255) ggATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCggg > 1:929482/1‑144 (MQ=255) gcctgcTGATCGAGCAGCTGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGAc > 2:721140/1‑150 (MQ=255) gccagcTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGCCCCGCGAc > 1:355665/1‑150 (MQ=255) ctagcTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACa > 1:2338563/3‑150 (MQ=255) tgctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTg < 2:600021/120‑1 (MQ=255) tgctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTg > 1:600021/1‑120 (MQ=255) tgctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACCACGGc > 2:825991/1‑150 (MQ=255) ctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAg > 1:1666318/1‑150 (MQ=255) ctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAg > 2:649461/1‑150 (MQ=255) gctgcagcagGC‑TGCACGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg < 2:584505/125‑1 (MQ=255) gctgcagcagGC‑TGCACGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg > 1:584505/5‑129 (MQ=255) gATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtc > 2:2421963/1‑150 (MQ=255) gATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtc > 1:1492219/1‑150 (MQ=255) gATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtc > 1:1915258/1‑150 (MQ=255) ctgcagcagGC‑TGCACGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtc > 1:1897456/4‑150 (MQ=255) tgcagcagGC‑TGCACGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAgg < 1:1428263/94‑1 (MQ=255) tgcagcagGC‑TGCACGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAgg > 2:1428263/3‑96 (MQ=255) tCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCGGCGGGGCGACCCGCGACAACGGCAGAtctc > 2:123668/1‑150 (MQ=255) tCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtctc < 2:1666318/150‑1 (MQ=255) agcagGCGTGCC‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTccc < 1:1474242/150‑1 (MQ=255) cagGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCa > 2:957502/1‑150 (MQ=255) gggCGCGCA‑GCCTGTTGCAGCGGCTGTTGGTTGCGCCACATGACATGCACGGGCAGATGCTATTCGGTGCGTGTATTACGGAATGCCAGGCGCACCAGACGCCCGCTAGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAg < 1:2227516/149‑1 (MQ=255) agGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGa > 2:2425940/1‑43 (MQ=255) agGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGa < 1:2425940/43‑1 (MQ=255) agGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGa > 1:50180/1‑99 (MQ=255) agGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGa < 2:50180/99‑1 (MQ=255) gCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg > 1:1819560/1‑119 (MQ=255) gCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg < 2:1819560/119‑1 (MQ=255) tGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCaa < 2:1915258/150‑1 (MQ=255) tGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCaa > 2:2068787/1‑150 (MQ=255) cA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGc < 2:2243859/150‑1 (MQ=255) | GCGCGCTCATGACGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGC > NC_002947/2566985‑2567276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |