Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,282,337:1 +C 5.7% coding (72/300 nt) PP_2883 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,282,3371.C 5.7% 364.8 / 14.0 88coding (72/300 nt)PP_2883hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (47/36);  new base C (3/2);  total (50/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

CAGTGTTCGAGGCCGGCCTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACTGTGCGGCAGG  >  NC_002947/3282188‑3282486
                                                                                                                                                      |                                                                                                                                                     
cAGTGTTCGAGGCCGGCCTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAggtgg                                                                                                                                                        <  1:1916420/150‑1 (MQ=255)
 aGTGTTCGAGGCCGGCCTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAggtgg‑t                                                                                                                                                      >  1:1413142/1‑150 (MQ=255)
     ttCGAGGCCGGCCTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCA‑CCACCTTGAGGTGGCTGCAc                                                                                                                                                  <  1:1249037/150‑1 (MQ=255)
           gccggccTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAg                                                                                                                                            >  2:2046316/1‑150 (MQ=255)
            ccggccTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCGCCTCAAGGTGG‑TGCACGCCAAgg                                                                                                                                           <  2:1192757/150‑1 (MQ=255)
              ggccTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGc                                                                                                                                         <  2:1120252/150‑1 (MQ=255)
              ggccTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGc                                                                                                                                         <  1:772776/150‑1 (MQ=255)
               gccTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGcc                                                                                                                                        >  1:1666089/1‑150 (MQ=255)
                 cTGTTCGCCGTCGGGGGCTTGGCAACGATTGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCcac                                                                                                                                      <  1:1077210/150‑1 (MQ=255)
                 cTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCcac                                                                                                                                      >  2:2093487/1‑150 (MQ=255)
                         cGTCGGGGGCGTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCa                                                                                                                              <  2:2203859/150‑1 (MQ=255)
                          gTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAg                                                                                                                             <  2:1490736/150‑1 (MQ=255)
                          gTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAg                                                                                                                             <  1:1924808/150‑1 (MQ=255)
                                 gCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTgg                                                                                                                      >  2:1177210/1‑150 (MQ=255)
                                   ttGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGAACAACAAGGGCCACATTGCGCAGGCACTGGTa                                                                                                                    <  1:1881952/150‑1 (MQ=255)
                                        aacgaacgCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACAt                                                                                                               <  1:914294/150‑1 (MQ=255)
                                        aacgaacgCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACAt                                                                                                               >  2:491323/1‑150 (MQ=255)
                                           gaacgCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATccc                                                                                                            >  1:2323096/1‑150 (MQ=255)
                                             acgCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCNCgg                                                                                                          <  2:1496884/150‑1 (MQ=255)
                                                       ccAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCCGGGATTATGCTCAAGGTGG‑TGCACGCCAAGGGCCACCTTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTg                                                                                                >  1:2253630/1‑150 (MQ=255)
                                                              ttCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCt                                                                                         >  2:195948/1‑150 (MQ=255)
                                                              ttCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCt                                                                                         >  1:2176457/1‑150 (MQ=255)
                                                               tCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCtg                                                                                        <  1:195948/150‑1 (MQ=255)
                                                                 ggTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCtgtg                                                                                      >  2:286861/1‑150 (MQ=255)
                                                                   tATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTggg                                                                                    >  2:45928/1‑150 (MQ=255)
                                                                     tCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTc                                                                                  >  1:574721/1‑150 (MQ=255)
                                                                       cAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTa                                                                                                                    >  2:1982870/1‑114 (MQ=255)
                                                                       cAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTa                                                                                                                    <  1:1982870/114‑1 (MQ=255)
                                                                       cAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCaa                                                                                >  1:2312970/1‑150 (MQ=255)
                                                                        aGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAg                                                                               >  2:613865/1‑150 (MQ=255)
                                                                         gggCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCaata                                                                              <  2:2312970/150‑3 (MQ=255)
                                                                           gCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATc                                                                            >  1:670912/1‑150 (MQ=255)
                                                                            ccAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCCCTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCa                                                                           >  2:807881/1‑150 (MQ=255)
                                                                            ccAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCa                                                                           <  2:2323096/150‑1 (MQ=255)
                                                                             cAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAggg                                                                                                                                          <  1:1307658/86‑1 (MQ=255)
                                                                             cAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAggg                                                                                                                                          >  2:1307658/1‑86 (MQ=255)
                                                                                  tCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGTAGTCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAAtt                                                                     >  1:61373/1‑150 (MQ=255)
                                                                                   cAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTc                                                                    <  2:1666089/150‑1 (MQ=255)
                                                                                   cAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTc                                                                    <  1:1160751/150‑1 (MQ=255)
                                                                                     gTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGc                                                                  <  1:2046316/150‑1 (MQ=255)
                                                                                        gCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCgg                                                               >  1:85148/1‑150 (MQ=255)
                                                                                         ccAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGc                                                              >  2:1289361/1‑150 (MQ=255)
                                                                                          cAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCg                                                             >  1:40305/1‑150 (MQ=255)
                                                                                           aGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCgt                                                            >  2:1856482/1‑150 (MQ=255)
                                                                                           aGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCgt                                                            <  2:574721/150‑1 (MQ=255)
                                                                                            gCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCgtg                                                           >  1:124799/1‑150 (MQ=255)
                                                                                             cccTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTgg                                                                                                                      >  1:675519/1‑90 (MQ=255)
                                                                                             cccTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTgg                                                                                                                      <  2:675519/90‑1 (MQ=255)
                                                                                                tGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTgg                                                       >  1:1110580/1‑150 (MQ=255)
                                                                                                     gCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCtg                                                  <  2:124799/150‑1 (MQ=255)
                                                                                                       cGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCg                                                                                                           >  1:390768/1‑91 (MQ=255)
                                                                                                       cGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCg                                                                                                           <  2:390768/91‑1 (MQ=255)
                                                                                                       cGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCtgat                                                >  1:1165997/1‑150 (MQ=255)
                                                                                                       cGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCtgat                                                <  1:1565811/150‑1 (MQ=255)
                                                                                                          cATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACTCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTgatgat                                             >  2:1350849/1‑150 (MQ=255)
                                                                                                            tCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGAtct                                           >  1:1690122/1‑150 (MQ=255)
                                                                                                              gATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCtga                                                 >  1:2297151/1‑142 (MQ=255)
                                                                                                              gATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCtga                                                 >  1:2297494/1‑142 (MQ=255)
                                                                                                              gATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCtga                                                 <  2:2297494/142‑1 (MQ=255)
                                                                                                              gATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCtga                                                 <  2:2297151/142‑1 (MQ=255)
                                                                                                              gATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCg                                         >  2:569065/1‑150 (MQ=255)
                                                                                                              gATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCg                                         <  1:579724/150‑1 (MQ=255)
                                                                                                               tgcacgccgcgATGGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCgg                                        >  1:2108950/6‑150 (MQ=255)
                                                                                                                tCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGc                                       <  2:2253630/150‑1 (MQ=255)
                                                                                                                  aGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCt                                     >  2:2183502/1‑150 (MQ=255)
                                                                                                                   ggCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTc                                    >  1:196930/1‑150 (MQ=255)
                                                                                                                    gccgccATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCCAGGGCCACATTGCGGAGGCACTGGTAGACATCCCGGGCAATCGGGGAACTGCTGTGGGGCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCa                                   >  2:865350/1‑150 (MQ=255)
                                                                                                                     ccgccATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTAAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTGAt                                  >  1:1111355/1‑150 (MQ=255)
                                                                                                                         gcccttggcgTGCA‑CCACCTTGAGGTGGCTGCACGCCGAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCgg                              >  1:2394942/7‑150 (MQ=38)
                                                                                                                           tggcggcgTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGc                            <  2:2108950/148‑1 (MQ=255)
                                                                                                                           ccttggcgTGCA‑CCACCTTGAGGTGGCTGCACGCCGAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAg                                                                          >  2:957652/5‑104 (MQ=25)
                                                                                                                           ccttggcgTGCA‑CCACCTTGAGGTGGCTGCACGCCGAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAg                                                                          <  1:957652/100‑1 (MQ=25)
                                                                                                                           ccttggcgTGCA‑CCACCTTGAGGTGGCTGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGc                            >  2:2261466/5‑150 (MQ=255)
                                                                                                                            cgcgGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCGCATCCGGGcc                           <  2:1165997/150‑1 (MQ=255)
                                                                                                                              cggcgTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGa                         <  2:670912/150‑1 (MQ=255)
                                                                                                                               ggcgTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGAt                        >  1:1407804/1‑150 (MQ=255)
                                                                                                                                    gCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGAt                        <  2:1927101/145‑1 (MQ=255)
                                                                                                                                    gCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGAt                        >  1:1927101/1‑145 (MQ=255)
                                                                                                                                     cAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCtt                  <  1:613865/150‑1 (MQ=255)
                                                                                                                                          aCCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGc                            <  1:294760/135‑1 (MQ=255)
                                                                                                                                          aCCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGc                            >  2:294760/1‑135 (MQ=255)
                                                                                                                                          aCCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAAc             >  1:1846143/1‑150 (MQ=255)
                                                                                                                                          aCCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAAc             >  2:2220886/1‑150 (MQ=255)
                                                                                                                                            cTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTc                                                                                  <  1:1110620/79‑1 (MQ=255)
                                                                                                                                            cTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTc                                                                                  >  2:1110620/1‑79 (MQ=255)
                                                                                                                                            cTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACtg           >  1:1025778/1‑150 (MQ=255)
                                                                                                                                            cTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACtg           >  1:479908/1‑150 (MQ=255)
                                                                                                                                               aaGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACTGTGc        <  1:936961/150‑1 (MQ=255)
                                                                                                                                               aaGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACTGTGc        >  2:1690614/1‑150 (MQ=255)
                                                                                                                                               aaGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACGGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACTGTGc        <  2:670250/150‑1 (MQ=255)
                                                                                                                                                   tgg‑tgCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGAGCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACTGTGCGGCa    <  1:295225/150‑1 (MQ=255)
                                                                                                                                                     g‑tgCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACTGTGCGGCAgg  <  1:1177210/150‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
CAGTGTTCGAGGCCGGCCTGTTCGCCGTCGGGGGCTTGGCAACGAACGCAATGCGCCAGGCCTTCGGTATCCAGGGCCAACGTCAGTTGCCAGCCCTGGATGCCGACATCGATCAGGCCGCCATCGCGGCGTGCAGCCACCTCAAGGTGG‑TGCACGCCAAGGGCCACATTGCGCAGGCACTGGTAGACATCCCGGGCGTTCGGTGAACGTCTGTGGGTCAAGATCAGAAATTCGCCGGCGTGTTGGCGCTGATGATCTCGGCCTCATCCGGGCCGATGTTCTTGAAACTGTGCGGCAGG  >  NC_002947/3282188‑3282486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑