New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 143265 = | 84 (0.900) | 8 (0.090) | 5/240 | NT | 9.0% | coding (213/291 nt) | PP_5428 | hypothetical protein |
? | NC_002947 | 143284 = | 82 (0.920) | coding (232/291 nt) | PP_5428 | hypothetical protein |
GATGAGGAAAGTGATAGCCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/143416‑143265 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGCCATTGTCTCACCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTATCACTTTCCT > NC_002947/143284‑143412 GATGAGGAAAGTGATAGCCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCC > 1:1176471/1‑150 CCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGG‑CAGCCCGCTGGCCAGGCCAT > 1:1122076/1‑140 CCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGG‑CAGCCCGCTGGCCAGGCCAT < 2:1122076/140‑1 GGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAAAAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGG‑CAGCCCGCTGGCCAGGCCATT > 1:64344/1‑95 GGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAAAAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGG‑CAGCCCGCTGGCCAGGCCATT < 2:64344/95‑1 ACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGC > 1:234383/1‑150 ACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAA > 1:1400132/1‑119 ACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAA < 2:1400132/119‑1 AGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTA > 1:1386265/1‑150 TGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTATC < 2:234383/150‑1 GCCTGGCCAGCGGGCT‑GCCAGGCCATTGTCTCACCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTATCACTTTCCT > 1:1491003/1‑150 GATGAGGAAAGTGATAGCCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/143416‑143265 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGCCATTGTCTCACCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTATCACTTTCCT > NC_002947/143284‑143412 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |