| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 196250 | 167 (1.790) | 10 (0.110) | 6/240 | NT | 5.7% | coding (1756/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | = 196255 | 168 (1.880) | coding (1761/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
CCCGGCCAATGACGTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/196099‑196250‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacggGCTCG‑CCGTCAGGGTCGCGGTAGTGGTGTCGACCGAGTCGTTGATCGTGGTCTGAGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAATTACCGCCCGTGGCGTTCTCGATGGTGACGCTGACCGTCGAACCGTTGTTGTAGACGT < NC_002947/196255‑196110 CCCGGCCAATGACGTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGAC > 2:2452429/1‑150CCCGGCCAATGACGTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCCGAC > 1:726915/1‑150CCCGGCCAATGACGTCTACAACAACGGTGCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGGCCCTGAC > 1:425936/1‑150 CGGCCAATGACGTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGG > 2:1389159/1‑150 ACGTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCCGACGGGCTCG‑CCGT > 1:846078/1‑150 GTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGGCTCG‑CCGTCA < 2:85016/150‑1 CTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGGCTCG‑CCGTCAGG < 1:1720721/150‑1 CTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCAC‑GGCGCTCATCTGCTATCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCCGACGGGCTCG‑CCGTCAGG < 2:1882612/150‑1 CCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGGCTCG‑CCGTCAGG < 2:969434/80‑1 CCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGGCTCG‑CCGTCAGG > 1:969434/1‑80 CCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCCGACGGGCTCG‑CCGTCAGG > 2:1809266/1‑80 CCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCCGACGGGCTCG‑CCGTCAGG < 1:1809266/80‑1 CACTACCGCGACCCTGAC‑GGCGAGCCCGTCGGGGTCGCGGTAGTGGTGTCGACCGAGTCGTTGATCGTGGTCTGAGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAATTACCGCCCGTGGCGTTCTCGATGGTGACGCTGACCGTCGAA > 2:726915/1‑150 CCGCGACCCTGAC‑GGCGAGCCCGTCGGGGTCGCGGTAGTGGTGTCGACCGAGTCGTTGATCGTGGTCTGAGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAATTACCGCCCGTGGCGTTCTCGATGGTGACGCTGACCGTCGAACCGTT > 2:846078/1‑150 GACGGGCTCG‑CCGTCAGGGTCGCGGTAGTGGTGTCGACCGAGTCGTTGATCGTGGTCTGAGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAATTACCGCCCGTGGCGTTCTCGATGGTGACGCTGACCGTCGAACCGTTGTTGTAGACG > 1:1389159/1‑150 ACGGGCTCG‑CCGTCAGGGTCGCGGTGGTGGCATCGACCGAGTCGTTGATCGTGGTCTGAGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAATTACCGCCCGTGGCGTTCTCGATGGTGACGCTGACCGTCGAACCGTTGTTGTAGACGT < 2:1623746/150‑1 ACGGGCTCG‑CCGTCAGGGTCGCGGTAGTGGTGTCGACCGAGTCGTTGATCGTGGTCTGAGCCGGCGTCGGGGTCGGGGTCAGTTGCTCGAAATTACCGCCCGTGGCGTTCTCGATGGTGACGCTGACCGTCGAACCGTTGTTGTAGACGT > 2:356492/1‑150 ACGGGCTCG‑CCGTCAGGGTCGCGGTAGTGGTGTCGAC < 2:22216/37‑1 ACGGGCTCG‑CCGTCAGGGTCGCGGTAGTGGTGTCGAC > 1:22216/1‑37 CCCGGCCAATGACGTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACGGGCGGTAAT‑TTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/196099‑196250‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacggGCTCG‑CCGTCAGGGTCGCGGTAGTGGTGTCGACCGAGTCGTTGATCGTGGTCTGAGCCGGCGTCGGGTTCGGGGTCAGTTGCTCGAAATTACCGCCCGTGGCGTTCTCGATGGTGACGCTGACCGTCGAACCGTTGTTGTAGACGT < NC_002947/196255‑196110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |