| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 278757 | 70 (0.750) | 6 (0.080) | 6/202 | NT | 8.5% | intergenic (‑252/+63) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 278780 | 73 (0.970) | intergenic (‑275/+40) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein | |||||
AAAATAGTTATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/278586‑278757‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACCGGACCAC < NC_002947/278780‑278635 AAAATAGTTATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TT > 1:1519156/1‑150 AGTTATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGG < 2:930866/150‑1 TTATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGT > 1:1325819/1‑150 GTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAAC < 1:2009650/150‑1 ACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTC < 1:781064/150‑1 GCTGATGGCAACAGACGTGTGCTGGTCCGGGGGTCCGGTATATACACACTATTAATTTATAAAATTTTTATGAACTAACTTTGTGGAATATTTATAGAAGGGGCATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAACCCCGCTCCTA < 2:865683/150‑1 GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTA > 2:415055/1‑150 GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTA > 1:1020982/1‑150 GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTA > 2:415002/1‑150 CTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGTGCTC‑TTCGCGGGTAAACCCGCTCCTAC > 2:1606489/1‑150 CTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTAC > 2:2372375/1‑150 GACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCC < 1:2186865/134‑1 GACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCC > 2:2186865/1‑134 CGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCG < 2:849529/150‑1 CGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGC < 1:1190592/150‑1 GTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGG > 2:560790/1‑149 GTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGG < 1:560790/149‑1 TATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAG < 1:2207203/141‑1 TATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAG > 2:2207203/1‑141 ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAAC < 2:838655/72‑1 ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAAC > 1:838655/1‑72 TCGCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGGCATTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAG > 1:1860602/1‑150 GCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGG < 2:844979/150‑1 GCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGG < 1:702837/76‑1 GCGGGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGG > 2:702837/1‑76 GGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTAT < 1:136435/150‑1 GGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATA > 2:1961897/1‑125 GGTAAACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATA < 1:1961897/125‑1 ACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATA > 1:2004410/1‑150 ACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTA < 2:2036889/144‑1 ACCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTA > 1:2036889/1‑144 CCCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCACGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATAC > 1:1606489/1‑150 CCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACC > 1:1143324/1‑150 CCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTA > 2:2259096/1‑111 CCGCTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTA < 1:2259096/111‑1 CGCTCCTCCAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACCG < 1:820940/150‑1 CGCGCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACCG < 2:629152/150‑1 CTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACCGGA < 1:682415/150‑1 CTCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACCGGA < 1:671702/150‑1 TCCTACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCAGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACCGGAC < 2:1143324/150‑1 TACAGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACCGGACCAC > 1:2215421/1‑150 AAAATAGTTATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/278586‑278757‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaGTGCACAGATCTTGAGGCATGTGTGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCACCTCTGTAACAAATCCCCCTTCTATAAATATTCCAAAAAGTTAGTTCATAAAAATTTTATAAATCATTAGGGTATATATACCGGACCAC < NC_002947/278780‑278635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |