| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 359677 = | 100 (1.070) | 25 (0.280) | 17/236 | NT | 22.6% | intergenic (+34/+86) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 359721 = | 77 (0.870) | intergenic (+78/+42) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein | |||||
CCGGCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/359831‑359677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCAC > NC_002947/359721‑359867 CCGGCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCT > 2:591112/1‑150 CGGCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTG > 2:891487/1‑150 CGGCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTG > 2:161998/1‑150 GCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTG < 2:1005220/150‑1 CAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGG < 1:1929485/150‑1 AGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCAACTGACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGG < 1:748692/150‑1 ACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTG < 2:2317994/77‑1 ACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTG > 1:2317994/1‑77 CCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTG > 1:2088021/1‑150 CCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGC > 1:275264/1‑150 TTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTG < 2:2341981/146‑1 TTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTG > 1:2341981/1‑146 AACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGG > 2:352929/1‑150 CCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGC < 1:1166306/145‑1 CCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGC > 2:1166306/1‑145 CCCACAGATCACCGCTGGCTCAAGCTCAGC‑GGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTG > 1:1801172/1‑150 CACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCCGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGC > 1:1759952/1‑150 ACAGATCACCGCTGGCTCAAGCTCAGCGGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCC > 1:979949/1‑150 ACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGC < 2:2300215/149‑1 ACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCG > 2:41735/1‑150 ACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCG > 2:885355/1‑150 ACAGATCACCGCTGGCGCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGC > 1:2300215/1‑149 CAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCCTACGGCCGG > 2:1995906/1‑150 AGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGC > 1:80984/1‑150 GATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCA < 2:80984/150‑1 CACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGTTGGCCGGGCGTACTGCCGGCAGG > 2:1133202/1‑150 CACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCA > 2:1385219/1‑148 CACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCA < 1:1385219/148‑1 CACCGCTGGCTCAAGCTCAGC‑GGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGAGTGCTGGCGGCAGGg > 2:1094620/1‑149 CGCTGGCTCAAGCTCAGCGGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATC > 2:2063863/1‑150 CGCTGGCTCAAGCTCAGCGGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACG < 1:810208/79‑1 CGCTGGCTCAAGCTCAGCGGGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACG > 2:810208/1‑79 TGGCTCAAGCTCAGCGGGTGACCCGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTC < 2:1759952/150‑1 TGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGTCAGGATCGTCGCACTGCCGGTGTACATCTGCTC < 1:787474/150‑1 GGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCAC < 1:1161166/150‑1 GGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACAT > 2:302071/1‑140 GGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACAT < 1:302071/140‑1 CCGGCAGTACGCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/359831‑359677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATCGTCGCACTGCCGGTGTACATCTGCTCCAC > NC_002947/359721‑359867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |