New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	447140 =	80 (0.860)	10 (0.120)	6/228	NT	11.4%	intergenic (+17/‑285)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
	?	NC_002947	447174 =	82 (0.960)					intergenic (+51/‑251)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase

CGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGCGGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/447299‑447140 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgggttttTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGC  >  NC_002947/447174‑447320                                                                                                                                                                                                                                                                                                                     CGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCA                                                                                                                                                               >  1:1538114/1‑150  GGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAG                                                                                                                                                              <  2:814226/150‑1   GGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGG                                                                                                                                                             <  1:1178374/150‑1    ggTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGTGGTGCTATGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGC                                                                                                                                                            <  2:584712/148‑1    GTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGC                                                                                                                                                            >  2:1896674/1‑150      TTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGCGG                                                                                                                                                          <  1:1541079/150‑1      TTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGCGG                                                                                                                                                          <  2:1668190/150‑1        ACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGCGGGT                                                                                                                                                        <  1:2331363/150‑1          CCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGCGGGTTT                                                                                                                                                      >  1:2154788/1‑150          CCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGAGGGGAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGCGGGTTT                                                                                                                                                      >  2:1046500/1‑150           CGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGCGGGTTTT                                                                                                                                                     <  1:1218969/150‑1                                                                                                                                AAACCCGCCTCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACC                                                         >  2:1074405/1‑125                                                                                                                                AAACCCGCCTCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACC                                                         <  1:1074405/125‑1                                                                                                                                  ACCCGCCTCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGT                              >  2:1891010/1‑150                                                                                                                                    CCGCCTCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAA                            >  1:7902/1‑150                                                                                                                                    CCGCCTCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAA                            >  1:1794995/1‑150                                                                                                                                    CCGCCTCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAG                                                                                              >  2:1893816/1‑84                                                                                                                                    CCGCCTCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAG                                                                                              <  1:1893816/84‑1                                                                                                                                    CCGCCTCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGG                                                                                                              <  1:693810/68‑1                                                                                                                                    CCGCCTCCCGATCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAA                            >  2:98796/1‑150                                                                                                                                    CCGCCCCCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGG                                                                                                              >  2:693810/1‑68                                                                                                                                                          GGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCG      >  1:531628/1‑150                                                                                                                                                          GGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCG      >  2:1829420/1‑150                                                                                                                                                          GGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCG      >  1:1838677/1‑150                                                                                                                                                          GGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGC                                  <  1:713209/122‑1                                                                                                                                                          GGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGC                                  >  2:713209/1‑122                                                                                                                                                            GTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTG    >  2:670128/1‑150                                                                                                                                                             TTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTATGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGG   <  1:1940341/150‑1                                                                                                                                                              TTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCACTCACCATCAGCCGTTCACCTTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGC  <  1:292054/150‑1                                                                                                                                                              TTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGC  <  2:111790/150‑1                                                                                                                                                                                                                                                                                                                     CGGGTTTACCCGCGAATACGGTAGCGCTGGCAACGGTGAACGGCTGATGGAGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCACGCTGAACCTGAAGACGTAAAAAACCCGCCTCCCGGTCAGGGCAGGCGGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/447299‑447140 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgggttttTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAAGGCTCGCGTGGC  >  NC_002947/447174‑447320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.