New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 447150	81 (0.870)	9 (0.110)	9/228	NT	10.4%	intergenic (+27/‑275)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase
	?	NC_002947	= 447162	82 (0.960)					intergenic (+39/‑263)	PP_0368/PP_0369	acyl‑CoA dehydrogenase/diguanylate cyclase

CAAGCTGCAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/446994‑447150 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacccgcct‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAAGTAGA  <  NC_002947/447162‑447014                                                                                                                                                                                                                                                                                                                     CAAGCTGCAGACTGCGCGCTTCTACTTCCGGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAA                                                                                                                                                               >  1:1762700/1‑150  AAGCTGCAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAAC                                                                                                                                                              <  2:1258271/150‑1  AAGCTGCAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAAC                                                                                                                                                              >  2:1038931/1‑150        CAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT                                                                                                                                                        >  1:1122331/1‑150                      CTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAG                                                                                                                                         >  2:598531/1‑150                          TTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGG                                                                                                                                     <  1:1792699/150‑1                          TTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGG                                                                                                                                     <  1:598531/150‑1                                                   GTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGG                                                                                                                                     >  1:1895303/1‑125                                                   GTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGG                                                                                                                                     <  2:1895303/125‑1                                                                                  CAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGGG                                                                                                                                    <  2:594020/95‑1                                                                                  CAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGGG                                                                                                                                    >  1:594020/1‑95                                                                                                              CACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCG                                                                                                                                      <  2:1587995/65‑1                                                                                                              CACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCG                                                                                                                                      >  1:1587995/1‑65                                                                                                                                                 CCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGC              >  1:2063679/1‑150                                                                                                                                                  CAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACTTGTACGTGGCAGGATGCG             >  1:1943225/1‑150                                                                                                                                                    AAACCCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCT           <  2:1623147/150‑1                                                                                                                                                    AAACCCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGT                                                                                                           >  1:2013735/1‑54                                                                                                                                                    AAACCCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGT                                                                                                           <  2:2013735/54‑1                                                                                                                                                       CCCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGA        >  1:223745/1‑150                                                                                                                                                        CCGCCT‑TCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCACCACATGGGTACGGGTACGTGGCAGGATGCGCAGGAA       <  2:1086338/150‑1                                                                                                                                                        CCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAA       <  2:1349355/150‑1                                                                                                                                                        CCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAA       >  1:1251763/1‑150                                                                                                                                                        CCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCA                    >  2:772696/1‑137                                                                                                                                                        CCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCA                    <  1:772696/137‑1                                                                                                                                                        CCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAACGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAA       >  1:2015831/1‑150                                                                                                                                                          GCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAAGT     >  2:1418019/1‑150                                                                                                                                                          GCCT‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAAGT     >  1:1700783/1‑150                                                                                                                                                             T‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAAGTAGA  >  2:574407/1‑150                                                                                                                                                             T‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAAGTA    >  2:2252183/1‑148                                                                                                                                                             T‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCCGGAAGTAGA  >  2:1762700/1‑150                                                                                                                                                             T‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGGCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAAGTA    <  1:2252183/148‑1                                                                                                                                                                                                                                                                                                                     CAAGCTGCAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/446994‑447150 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacccgcct‑CCCGGTCAGGGCAGGCGGGTTTTGGGTACAGCGCCAGTATCAGTACGACAGGCCGAAGTGCTCTTCGTCCATCGCCATCAGGTTGTTGGCGCCCGACAGCATGGTCGCCACATGGGTACGGGTACGTGGCAGGATGCGCTGGAAGTAGA  <  NC_002947/447162‑447014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.