| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 655948 = | 101 (1.080) | 6 (0.070) | 6/240 | NT | 5.7% | coding (398/1356 nt) | PP_0563 | two‑component system response regulator |
| ? | NC_002947 | 655975 = | 102 (1.140) | coding (371/1356 nt) | PP_0563 | two‑component system response regulator | |||||
CATCATCATGGATGTCGACTTCACCGGCGCCGGCCTGGGCTTGCTGCTGGCCGCTCAGGTGCAGCAGGGCCTGGCACGCTCCATTCCGTTGCTGTTCTTCAGCCATCACGAAGCCGACACCCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/656100‑655948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGAT > NC_002947/655975‑656123 CATCATCATGGATGTCGACTTCACCGGCGCCGGCCTGGGCTTGCTGCTGGCCGCTCAGGTGCAGCAGGGCCTGGCACGCTCCATTCCGTTGCTGTTCTTCAGCCATCACGAAGCCGACACCCCTACCCGCCTTGCCGCAGTGCGCGCCGG > 1:1932680/1‑150 TCATCATGGATGTCGACTTCACCGGCGCCGGCCTGGGCTTGCTGCTGGCCGCTCAGGTGCAGCAGGGCCTGGCACGCTCCATTCCGTTGCTGTTCTTCAGCCATCACGAAGCCGACACCCCTACCCGCCTTGCCGCAGTGCGCGCCGGCG < 1:1555597/150‑1 TCATCATGGATGTCGACTTCACCGGCGCCGGCCTGGGCTTGCTGCTGGCCGCTCAGGTGCAGCAGGGCCTGGCACGCTCCATTCCGTTGCTGTTCTTCAGCCATCACGAAGCCGACACCCCTACCCGCCTTGCCGCAGTGCGCGCCGGCG > 1:1951935/1‑150 CCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCC > 1:1376461/1‑150 CCGCCTTGCCGCAGTGCGCGCCGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGA > 1:918311/1‑99 CCGCCTTGCCGCAGTGCGCGCCGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGA < 2:918311/99‑1 CGCCTTGCCGCAGTGCGCGCCGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGA < 2:1376461/150‑1 CCTTGCCGCAGTGCGCGCCGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATG < 1:960094/69‑1 CCTTGCCGCAGTGCGCGCCGGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATG > 2:960094/1‑69 GGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGC < 1:2163849/82‑1 GGCGGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGC > 2:2163849/1‑82 GGGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGA < 1:1311034/150‑1 GGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGAT < 2:2061702/150‑1 CATCATCATGGATGTCGACTTCACCGGCGCCGGCCTGGGCTTGCTGCTGGCCGCTCAGGTGCAGCAGGGCCTGGCACGCTCCATTCCGTTGCTGTTCTTCAGCCATCACGAAGCCGACACCCCTACCCGCCTTGCCGCAGTGCGCGCCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/656100‑655948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGTAGGGGTGTCGGCTTCGTGATGGCTGAAGAACAGCAACGGAATGGAGCGTGCCAGGCCCTGCTGCACCTGAGCGGCCAGCAGCAAGCCCAGGCCGGCGCCGGTGAAGTCGACATCCATGATGATGGCCGACGGCGGGTACTCGCTGAT > NC_002947/655975‑656123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |