| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 662507 = | 143 (1.530) | 8 (0.090) | 7/240 | NT | 5.6% | coding (451/1338 nt) | PP_0569 | MATE efflux family protein |
| ? | NC_002947 | 662530 = | 135 (1.510) | coding (428/1338 nt) | PP_0569 | MATE efflux family protein | |||||
TGCTGGCGGTCGGCTTCGCCCTGTTGATCGGCCTGCTGGCCCTGCCCTTCAGCCAGCTGGCACTCCATGCGATGCAACCCAGCGCAGCCCTGCAGCAATCCACCGAAGACTTCTTCCACACCCGCCTGCTTGGCCTGC‑CTGCGGCGCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/662659‑662507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAG > NC_002947/662530‑662675 TGCTGGCGGTCGGCTTCGCCCTGTTGATCGGCCTGCTGGCCCTGCCCTTCAGCCAGCTGGCACTCCATGCGATGCAACCCAGCGCAGCCCTGCAGCAATCCACCGAAGACTTCTTCCACACCCGCCTGCTTGGCCTGC‑CTGCGGCGCTGG > 1:1981316/1‑150 CTGGCGGTCGGCTTCGCCCTGTTGATCGGCCTGCTAGCGCTGCCCTGCAGCCAGCTGGCACTCCATGCGATGCAACCCAGCGCAGATTTGCAGCAATCCACCGAAGACTTCTTCCACACCCGCCTGCTTGGCCTAC‑CTGCGGCGCTGGCC > 1:1355647/1‑150 TGGCGGTCGGCTTCGCCCTGTTGATCGGCCTGCTGGCCCTGCCCTTCAGCCAGCTGGCACTCCATGCGATGCAACCCAGCGCAGCCCTGCAGCAATCCACCGAAGACTTCTTCCACACCCGCCTGCTTGGCCTGC‑CTGCGGCGCTGGCCA < 2:285644/150‑1 TGGCGGTCGGCTTCGCCCTGTTGATCGGCCTGCTGGCCCTGCCCTTCAGCCAGCTGGCACTCCATGCGATGCAACCCAGCGCAGCCCTGCAGCAATCCACCGAAGACTTCTTCCACACCCGCCTGCTTGGCCTGC‑CTGCGGCGCTGGCCA > 1:2337781/1‑150 TGGCGGTCGGCTTCGCCCTGTTGATCGGCCTGCTGGCCCTGCCCTTCAGCCAGCTGGCACTCCATGCGATGCAACCCAGCGCAGCCCTGCAGCAATCCACCGAAGACTTCTTCCACACCCGCCTGCTTGGCCTGC‑CTGCGGCGCTGGCCA > 1:919291/1‑150 TTGATCGGCCTGCTGGCCCTGCCCTTCAGCCAGCTGGCACTCCATGCGATGCAACCCAGCGCAGCCCTGCAGCAATCCACCGAAGACTTCTTCCACACCCGCCTGCTTGGCCAGCGCCGCAG‑GCAGGCCAAGCAGGCGGGTGTGGAAGAA < 1:838768/150‑1 CCGCCTGCTTGGCCTGC‑CTGCGGCGCTGGCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGG > 2:249177/1‑84 CCGCCTGCTTGGCCTGC‑CTGCGGCGCTGGCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGG < 1:249177/84‑1 TTGGCCTGC‑CTGCGGCGCTGGCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAA > 1:1890664/1‑131 TTGGCCTGC‑CTGCGGCGCTGGCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAA < 2:1890664/131‑1 TTGGCCTGC‑CTGCGGCGCTGGCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCA < 1:1815823/82‑1 TTGGCCTGC‑CTGCGGCGCTGGCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCA > 2:1815823/1‑82 TGGCCTGC‑CTGCGGCGCTGGCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCA > 2:1816507/1‑150 GCCAAGCGGGCGGGGGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCTGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAG < 2:215713/150‑1 GCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCCGCAGGCCGATCAACAGGGCGAAGCCCACCGCCAGCAGCAGCCCTTGCCCCAG > 2:659899/1‑150 GCCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAG < 1:2346607/150‑1 CCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAGCAGG > 2:1482504/1‑114 CCAAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGG < 1:1482504/114‑1 AAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGG > 2:2179975/1‑91 AAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGG < 1:2179975/91‑1 TGCTGGCGGTCGGCTTCGCCCTGTTGATCGGCCTGCTGGCCCTGCCCTTCAGCCAGCTGGCACTCCATGCGATGCAACCCAGCGCAGCCCTGCAGCAATCCACCGAAGACTTCTTCCACACCCGCCTGCTTGGCCTGC‑CTGCGGCGCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/662659‑662507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaAGCAGGCGGGTGTGGAAGAAGTCTTCGGTGGATTGCTGCAGGGCTGCGCTGGGTTGCATCGCATGGAGTGCCAGCTGGCTGAAGGGCAGGGCCAGCAGGCCGATCAACAGGGCGAAGCCGACCGCCAGCAGCAGCCCTTGCACCAG > NC_002947/662530‑662675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |