| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 743268 | NA (NA) | 5 (0.060) | 7/242 | NT | NA | coding (1366/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | = 743278 | NA (NA) | coding (1376/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
AATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/743116‑743268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGTGGG < NC_002947/743278‑743130 AATGGAAGTAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGG > 1:1291116/1‑150AATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGG > 1:2055372/1‑150 ATGGAAGCAGCCTCCCACGAGGCTGAGGAACTTGATGCGCCGAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGA > 1:1232240/1‑150 ATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGA > 1:1148166/1‑150 ATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGA < 1:1575504/150‑1 gtttctCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGAC > 2:1269793/7‑150 TGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGGGACATATGAACTACGCGCTGCCAAAGAAACTGTGGGAC > 1:124523/1‑150 TGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGAAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGAC < 1:52937/150‑1 GGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACC < 2:1112641/150‑1 GGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGCCCCTGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACC < 1:2126637/150‑1 GCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCAGCCCGAGCCGGTCCCACA < 2:320754/150‑1 GAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACC < 2:937987/100‑1 GAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACC > 1:937987/1‑100 CAAAGAAACTGTGGGACCGGCTCGGGCTGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGA > 1:221665/1‑103 CAAAGAAACTGTGGGACCGGCTCGGGCTGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGA < 2:221665/103‑1 AAACTGTGGGACCGGCTCGGGCTGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATG > 2:529438/1‑83 AAACTGTGGGACCGGCTCGGGCTGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATG < 1:529438/83‑1 TGTGGGACCGGCTCGGGCTGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGC > 1:1709402/1‑150 GTGGGACCGGCTCGGGCTGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATAGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCCACCCTAGACGCATCAAGTTTCTCAGCC > 1:2270024/1‑150 TGGGACCGGCTCGGGCTGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCCTTCTCCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCT > 1:1980869/1‑150 GACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGT < 1:1665411/150‑1 GACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGT > 1:857556/1‑150 ACCAGCCGGTGGTGGTCTCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGTG < 2:508686/150‑1 ACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGTG < 1:549141/150‑1 ACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGTG < 1:1688310/150‑1 ACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCAT < 2:1985654/85‑1 ACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCAT > 1:1985654/1‑85 CCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGTGG < 1:770899/150‑1 CCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGTGG < 1:548354/150‑1 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGC < 1:1041001/125‑1 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGC > 2:1041001/1‑125 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAAC < 2:1302748/118‑1 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAAC > 1:1302748/1‑118 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGA < 2:2184013/93‑1 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGA > 1:2184013/1‑93 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCAC > 2:204237/1‑67 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCAC > 1:584527/1‑67 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCAC < 2:584527/67‑1 CAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCAC < 1:204237/67‑1 CAGCCCGAGACGGTCCGACAGTTTCTTTGGCGGCGCGTGGACCATATGGTGCGCTCCCGAATGCAACCATGGTCCTCGGCCATTGAAGACTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCCGCCTCGTGGG > 2:1018897/1‑150 AATGGAAGCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTAGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/743116‑743268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCGTGGG < NC_002947/743278‑743130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |