New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1102886 =	92 (0.990)	10 (0.110)	7/234	NT	10.4%	intergenic (+20/‑98)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein
	?	NC_002947	1102932 =	86 (0.980)					intergenic (+66/‑52)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein

GACCCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1103040‑1102886 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggggcTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACGTGA  >  NC_002947/1102932‑1103080                                                                                                                                                                                                                                                                                                                  GACCCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGA                                                                                                                                                            >  2:263585/1‑150  ACCCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAG                                                                                                                                                           <  1:687354/150‑1      GGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCCCGTGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCACAACGAGGGCTTCACTGACCAAGGGGC                                                                                                                                                       >  1:148783/1‑150                                                                                                             AGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGC                                                                                           <  1:377485/107‑1                                                                                                             AGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGC                                                                                           >  2:377485/1‑107                                                                                                                CCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGG                                             >  2:1975784/1‑150                                                                                                                   TCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAA                                                                                    <  1:1885373/108‑1                                                                                                                   TCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAA                                                                                    <  1:552098/108‑1                                                                                                                   TCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAA                                                                                    >  2:552098/1‑108                                                                                                                   TCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAA                                                                                    >  2:1885373/1‑108                                                                                                                       CTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATT                                                                                                             >  2:855295/1‑79                                                                                                                       CTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATT                                                                                                             <  1:855295/79‑1                                                                                                                       CTGCGAAGCCCAACGAAGGCTTCGCAG‑GCGAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGCGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGT                                     >  1:1000352/1‑150                                                                                                                                                     GAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTG                                   >  1:1700233/1‑123                                                                                                                                                     GAGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTG                                   <  2:1700233/123‑1                                                                                                                                                      AGGGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAAGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAA       <  1:145495/150‑1                                                                                                                                                        GGGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACG     <  2:2418044/150‑1                                                                                                                                                         GGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACGT    >  1:1495432/1‑150                                                                                                                                                         GGCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGCTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACGT    >  2:1487598/1‑150                                                                                                                                                          GCTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCCGTTGAACGTG   >  2:183397/1‑150                                                                                                                                                           CTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACGTGA  <  2:1020511/150‑1                                                                                                                                                                                                                                                                                                                  GACCCGGGAACCCGGCAATTTCTCTTCAAGGAAGCTTTTAACTTCTACGGCCTGCATGCTCAACCTCAATCGGCGCCCGATGCGCACGGGTCGGCCATCATACAAAAAAGCCCCTCGCCTGCGAAGCCCAACGAAGGCTTCGCTGACCGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1103040‑1102886 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggggcTTTTTTGTATGATGGCCGACCCGTGCGCATCGGGCGCCGATTGAGGTTGAGCATGCAGGCCGTAGAAGTTAAAAGCTTCCTTGAAGAGAAATTGCCGGGTTCCCGGGTCGAAGTTGAAGGCGAAGGCTGCAACTTCCAGTTGAACGTGA  >  NC_002947/1102932‑1103080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.